View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13700_low_2 (Length: 429)
Name: NF13700_low_2
Description: NF13700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13700_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 26 - 422
Target Start/End: Complemental strand, 14871175 - 14870779
Alignment:
| Q |
26 |
gtgaacctcttgtttcttctcattggaatattccggtgcaagggtctcctatgtacattcttcatcacaagcttaagagtcttaagcctaaattgaagac |
125 |
Q |
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| T |
14871175 |
gtgaacctcttgtttcttctcattggaatattccggtgcaatagtctcctatgtacattcttcatcacaagcttaagagtcttaagcctaaattgaagac |
14871076 |
T |
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| Q |
126 |
tttgaataaaactgtggttggcaaccttactcaaaatatggatttcgcccatctgcaacttttgtcagctcaacttgctcttgatcagttgggtttcagt |
225 |
Q |
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| T |
14871075 |
ttggaataatactgtggttggcaactttactcaaaatgtggatttcgcccatcagcgactatcgtcatctcaacttgctcttgatcaattgggtttcagt |
14870976 |
T |
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| Q |
226 |
ttggatagatcccaggaagagctcactttcttaaccaattatagttaggctctacatgtgcttaatgatttttggaaggataaagctaaaaatgccaagt |
325 |
Q |
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| T |
14870975 |
ttggatagatcccagtaagagctcacttgcttaaccaattatagtcaggctctccatgtgcttaatgattcttggaaggatagagctaaaaatgtcatgt |
14870876 |
T |
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| Q |
326 |
tcattgatggtgacagaaacacttcctactttcatagaagtgtgaaaataagagaggcccaaagttacattagtctcctaaaaaataatgatgatgt |
422 |
Q |
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| T |
14870875 |
tcattgatggtgacagaaacactttctactttcatagaagtgtgaaaataagagagatcaaaagttacattagtctcttaaaaaataatcatgatgt |
14870779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 17226449 - 17226818
Alignment:
| Q |
19 |
gagagttgtgaacctcttgtttcttctcattggaatattccggtgcaagggtctcctatgtacattcttcatcacaagcttaagagtcttaagcctaaat |
118 |
Q |
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| T |
17226449 |
gagagttgtgaatcccttgtgtcatctcattggagcattccggttcatgggtctcctatgttcattcttcatcaaaagctcaagagtcttaagccaaagt |
17226548 |
T |
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| Q |
119 |
tgaagactttgaataaaactgtggttggcaaccttactcaaaatatggatttcgcccatctgcaacttttgtcagctcaacttgctcttgatcagttggg |
218 |
Q |
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| T |
17226549 |
tgaagcattggaataaaacagaagttggcaactttcatcataatgtggacttagcacaccaacaattgttagctgctcagctggccctggatcaattggg |
17226648 |
T |
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| Q |
219 |
tttcagtttggatagatcccaggaagagctcactttcttaaccaattatagttaggctctacatgtgcttaatgatttttggaaggataaagctaaaaat |
318 |
Q |
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| T |
17226649 |
tttcagtatggatagatctcaggatgaactcacatgcttaactaattacagtcaagcccttcacatcctaaacgatttctggaaggataaagccaagaat |
17226748 |
T |
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| Q |
319 |
gccaagttcattgatggtgacagaaacacttcctactttcatagaagtgtgaaaataagagaggcccaaa |
388 |
Q |
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| T |
17226749 |
gccaaattcattgatggagacagaaacactgcttactttcatagaagtgtgaaaattagagaggcacaaa |
17226818 |
T |
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