View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13700_low_3 (Length: 283)

Name: NF13700_low_3
Description: NF13700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13700_low_3
NF13700_low_3
[»] chr7 (2 HSPs)
chr7 (134-283)||(3417322-3417471)
chr7 (14-89)||(3417516-3417591)
[»] chr5 (4 HSPs)
chr5 (137-281)||(28385572-28385716)
chr5 (137-269)||(12540923-12541055)
chr5 (15-82)||(12540801-12540868)
chr5 (12-80)||(28385447-28385515)
[»] chr2 (6 HSPs)
chr2 (137-274)||(13440438-13440575)
chr2 (137-277)||(13448601-13448741)
chr2 (137-281)||(13455072-13455216)
chr2 (15-82)||(13448479-13448546)
chr2 (19-89)||(13454954-13455024)
chr2 (19-89)||(13440320-13440390)
[»] scaffold0536 (2 HSPs)
scaffold0536 (137-283)||(6303-6449)
scaffold0536 (167-270)||(1270-1373)
[»] chr4 (7 HSPs)
chr4 (139-248)||(48974349-48974458)
chr4 (137-249)||(48958385-48958497)
chr4 (12-80)||(48965442-48965510)
chr4 (137-274)||(48912146-48912283)
chr4 (19-89)||(48958264-48958337)
chr4 (19-89)||(48961413-48961486)
chr4 (157-203)||(48965587-48965633)
[»] chr6 (4 HSPs)
chr6 (137-272)||(12483267-12483402)
chr6 (141-281)||(12589963-12590103)
chr6 (19-53)||(12590197-12590231)
chr6 (57-89)||(12483450-12483482)
[»] chr8 (1 HSPs)
chr8 (168-271)||(12641285-12641388)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 134 - 283
Target Start/End: Complemental strand, 3417471 - 3417322
Alignment:
Q  134 caagaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatat 233  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3417471 caagaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatat 3417372  T
Q  234 gtacaacactgagttaacttgttgtgagttgagccaactcaggcactcat 283  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3417371 gtacaacactgagttaacttgttgtgagttgagccaacgcaggcactcat 3417322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 3417591 - 3417516
Alignment:
Q  14 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3417591 gaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcggcaacca 3417516  T

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Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 28385572 - 28385716
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||    
T  28385572 gaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatatgta 28385671  T
Q  237 caacactgagttaacttgttgtgagttgagccaactcaggcactc 281  Q
    ||  |||||||||||| | ||||| ||||||||  ||||||||||    
T  28385672 cacaactgagttaactcgctgtgatttgagccagttcaggcactc 28385716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 12540923 - 12541055
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    ||||||||||||||||||||||||||  | |||||| ||| ||||||||||||||||||||||| ||| ||||||  || | ||||||||||||||||||    
T  12540923 gaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatatgta 12541022  T
Q  237 caacactgagttaacttgttgtgagttgagcca 269  Q
    || ||||||||||||||| ||||||||||||||    
T  12541023 caccactgagttaacttgctgtgagttgagcca 12541055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 12540801 - 12540868
Alignment:
Q  15 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 82  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12540801 aacctgtggggcccaacccctaatgatcaaacccttttttccaatgtttctctcctcaaatcccttcg 12540868  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 28385447 - 28385515
Alignment:
Q  12 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 80  Q
    |||||| ||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||    
T  28385447 cagaacttgtggggcccaacccctgattatgaaacccttctttccaatgtttctctcctcaaatccctt 28385515  T

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Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 137 - 274
Target Start/End: Original strand, 13440438 - 13440575
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  13440438 gaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatatgta 13440537  T
Q  237 caacactgagttaacttgttgtgagttgagccaactca 274  Q
    |||||| ||||||||||  | ||||| |||||||||||    
T  13440538 caacaccgagttaactttctctgagtcgagccaactca 13440575  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 13448601 - 13448741
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    ||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| | ||||||||||||||||||    
T  13448601 gaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatatgta 13448700  T
Q  237 caacactgagttaacttgttgtgagttgagccaactcaggc 277  Q
    ||||||||||||||||   | ||| | ||||||||||||||    
T  13448701 caacactgagttaactctctctgaatcgagccaactcaggc 13448741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 281
Target Start/End: Original strand, 13455072 - 13455216
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    |||||||||||||||| || ||||| | |||||||| || |||||| ||||||||||||||||||| |||  |||| || | ||||||||||||||||||    
T  13455072 gaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgta 13455171  T
Q  237 caacactgagttaacttgttgtgagttgagccaactcaggcactc 281  Q
    ||| ||||||||||||   | |||||  ||||| |||||||||||    
T  13455172 caatactgagttaactctctttgagtcaagccagctcaggcactc 13455216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 13448479 - 13448546
Alignment:
Q  15 aacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcg 82  Q
    ||||||||||||||||||||||| ||||||||||||||| || || |||||||| |||||||||||||    
T  13448479 aacctgtggggcccaacccctaatgatcaaacccttcttcccgatatttctctcttcaaatcccttcg 13448546  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 13454954 - 13455024
Alignment:
Q  19 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 89  Q
    ||||||||||||||||||| |||||||||||| ||  | |||||| |||| ||||||||||||| ||||||    
T  13454954 tgtggggcccaacccctaatgatcaaaccctttttctcgatgtttttctcttcaaatcccttcggcaacca 13455024  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 13440320 - 13440390
Alignment:
Q  19 tgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatcccttcgacaacca 89  Q
    ||||||||||||||| ||| |||||||||| || | | |||||||||||| || |||||||| | ||||||    
T  13440320 tgtggggcccaacccttaatgatcaaacccatcctcctaatgtttctctcttcgaatccctttggcaacca 13440390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 283
Target Start/End: Complemental strand, 6449 - 6303
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    |||||||||||||||||  ||||||||||||||||||  | ||||||||||| || ||||||||||| | ||||  |   ||||||||||| ||||||||    
T  6449 gaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatatgta 6350  T
Q  237 caacactgagttaacttgttgtgagttgagccaactcaggcactcat 283  Q
    ||||||||||||| || | |  ||||  ||||||||||| |||||||    
T  6349 caacactgagttatctggcttcgagtctagccaactcagacactcat 6303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 1373 - 1270
Alignment:
Q  167 cttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgag 266  Q
    |||||| ||| | |||||||||||| | ||||||||||| |||||||   ||| ||||||| |||||||| |  ||||||||| || | | |||||||||    
T  1373 cttctagtgcacttgcaatctcatacaattgtttatcagggaaatagcaaaaggttccaaagcatatgtagagtactgagttatctcgctttgagttgag 1274  T
Q  267 ccaa 270  Q
    ||||    
T  1273 ccaa 1270  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 48974349 - 48974458
Alignment:
Q  139 acaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtaca 238  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| | ||| |||| || ||||| |   | ||| || ||||||||||| |    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatggcagaggctcccgaaacatatgtaga 48974448  T
Q  239 acactgagtt 248  Q
     |||||||||    
T  48974449 gcactgagtt 48974458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 48958385 - 48958497
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    ||||||||||||  |||  |||||| |||||||||||  | || ||||||||||| |||||||||||||| |||||    | ||||||||| ||||||||    
T  48958385 gaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatatgta 48958484  T
Q  237 caacactgagtta 249  Q
    |||||||||||||    
T  48958485 caacactgagtta 48958497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 48965442 - 48965510
Alignment:
Q  12 cagaacctgtggggcccaacccctaacgatcaaacccttctttccaatgtttctctcctcaaatccctt 80  Q
    ||||||||| || |||||||||||||  ||||||||||||||||||||||||||||| || ||||||||    
T  48965442 cagaacctgcggagcccaacccctaataatcaaacccttctttccaatgtttctctcttcgaatccctt 48965510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 274
Target Start/End: Complemental strand, 48912283 - 48912146
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    |||||||||||||||||  ||||| ||||||||| ||  |||| ||||||||||| ||||||||||| || ||||       ||||||||| ||||||||    
T  48912283 gaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatatgta 48912184  T
Q  237 caacactgagttaacttgttgtgagttgagccaactca 274  Q
    || ||| |||||| ||||||  ||||| ||||||||||    
T  48912183 caccaccgagttatcttgtttcgagttaagccaactca 48912146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 48958264 - 48958337
Alignment:
Q  19 tgtggggcccaacccctaacgatcaaacc---cttctttccaatgtttctctcctcaaatcccttcgacaacca 89  Q
    ||||||||||| ||||||| |||||||||   ||||||||||||||||||||| || ||||| |||| ||||||    
T  48958264 tgtggggcccaccccctaatgatcaaacctttcttctttccaatgtttctctcttcgaatcctttcggcaacca 48958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 48961413 - 48961486
Alignment:
Q  19 tgtggggcccaacccctaacgatcaaacccttctt---tccaatgtttctctcctcaaatcccttcgacaacca 89  Q
    ||||||||||| ||| ||| |||||||||||||||   | ||||||||||||| |||||||| |||| ||||||    
T  48961413 tgtggggcccaccccttaatgatcaaacccttcttcttttcaatgtttctctcttcaaatcctttcggcaacca 48961486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  157 tgacccgatgcttctattgcgcatgcaatctcatatagttgtttatc 203  Q
    |||||||||||||||||||| || ||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 12483402 - 12483267
Alignment:
Q  137 gaacaacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgta 236  Q
    |||||||||||||||||   | |||||||||||||||| |||||| ||| || || || |||||||||||||||| |   | ||| ||||| ||||||||    
T  12483402 gaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatatgta 12483303  T
Q  237 caacactgagttaacttgttgtgagttgagccaact 272  Q
    ||||||||| ||  |||| | |||||| ||||||||    
T  12483302 caacactgaattttcttgctttgagtttagccaact 12483267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 281
Target Start/End: Complemental strand, 12590103 - 12589963
Alignment:
Q  141 aacccatatgaatgggtgacccgatgcttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaac 240  Q
    |||||||| ||||  ||| || |||||||||||  | || | ||||||||| ||||||||||| |||||||||   | ||| ||||| ||||||||||||    
T  12590103 aacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgtacaac 12590004  T
Q  241 actgagttaacttgttgtgagttgagccaactcaggcactc 281  Q
    || |||||| || | |  ||||| ||||||||||| |||||    
T  12590003 acagagttatctcgcttcgagtttagccaactcagacactc 12589963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 12590231 - 12590197
Alignment:
Q  19 tgtggggcccaacccctaacgatcaaacccttctt 53  Q
    ||||||||||||||||||| |||||||||||||||    
T  12590231 tgtggggcccaacccctaatgatcaaacccttctt 12590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 12483482 - 12483450
Alignment:
Q  57 aatgtttctctcctcaaatcccttcgacaacca 89  Q
    |||||||||||||||||||||||||| ||||||    
T  12483482 aatgtttctctcctcaaatcccttcggcaacca 12483450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 271
Target Start/End: Complemental strand, 12641388 - 12641285
Alignment:
Q  168 ttctattgcgcatgcaatctcatatagttgtttatcagagaaatagttcaagcttccaaaacatatgtacaacactgagttaacttgttgtgagttgagc 267  Q
    ||||||| |||  |||||||| || ||||||||||||||||||||    | ||| |||||||||||||| |||||||| ||| |||| | ||| ||||||    
T  12641388 ttctattccgctcgcaatctcgtaaagttgtttatcagagaaataagagatgctcccaaaacatatgtataacactgaattatcttgctttgaattgagc 12641289  T
Q  268 caac 271  Q
    ||||    
T  12641288 caac 12641285  T

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