View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13700_low_6 (Length: 236)

Name: NF13700_low_6
Description: NF13700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13700_low_6
NF13700_low_6
[»] chr7 (1 HSPs)
chr7 (1-222)||(3417121-3417342)
[»] chr5 (2 HSPs)
chr5 (1-222)||(12541049-12541273)
chr5 (81-220)||(28385781-28385920)
[»] chr2 (3 HSPs)
chr2 (80-210)||(13440646-13440776)
chr2 (2-221)||(13448728-13448950)
chr2 (80-171)||(13455280-13455371)
[»] chr6 (1 HSPs)
chr6 (80-192)||(12589787-12589899)
[»] chr4 (4 HSPs)
chr4 (87-210)||(48958600-48958723)
chr4 (86-177)||(48962746-48962837)
chr4 (80-205)||(48911950-48912075)
chr4 (139-177)||(48974614-48974652)
[»] chr8 (1 HSPs)
chr8 (86-169)||(12641122-12641205)
[»] scaffold0536 (1 HSPs)
scaffold0536 (87-158)||(6163-6234)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3417342 - 3417121
Alignment:
Q  1 tgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaatagaagatggaccaagatgcca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3417342 tgagccaacgcaggcactcatgctcactctcagcaccctcgtttcccccacctgatttctctagagtggttctccaaatagaagatggaccaagatgcca 3417243  T
Q  101 agccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattacttttgaacactgtg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3417242 agccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgataaagccattacttttgaacactgtg 3417143  T
Q  201 tcaagcatcagtcctatgaatt 222  Q
    ||||||||||||||||||||||    
T  3417142 tcaagcatcagtcctatgaatt 3417121  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12541049 - 12541273
Alignment:
Q  1 tgagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaatagaaga---tggaccaagatg 97  Q
    ||||||| || ||| |||| ||||| ||| |||||||||| |||||||  |||||||||||| || || || ||  |||| ||||   ||||||||||||    
T  12541049 tgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatg 12541148  T
Q  98 ccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattacttttgaacact 197  Q
    ||||||||||||||| | ||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||  ||| ||||  ||||||||||||||    
T  12541149 ccaagccttgtgacccgtggttttctcgtagtgttggacacactcttctccatcaagttcaacaaagttgttgataatgtagcctgtacttttgaacact 12541248  T
Q  198 gtgtcaagcatcagtcctatgaatt 222  Q
    ||||||||||||| |||||||||||    
T  12541249 gtgtcaagcatcaatcctatgaatt 12541273  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 28385781 - 28385920
Alignment:
Q  81 gaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagc 180  Q
    |||| ||||||||||||||||||||||||||| | ||||||||| |||||||  | |||||||||||||||||||||||  |||||||||| |||| |||    
T  28385781 gaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctccatcaagttcaacaaagttgttgatgatgtagc 28385880  T
Q  181 cattacttttgaacactgtgtcaagcatcagtcctatgaa 220  Q
    |  ||||||||| ||| ||||||||||||| |||||||||    
T  28385881 ctgtacttttgagcaccgtgtcaagcatcattcctatgaa 28385920  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 13440646 - 13440776
Alignment:
Q  80 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 179  Q
    ||||| |||||| ||||||||| |||||||||| | |||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| |||||      
T  13440646 agaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcactcttctccgtcaagttcagtgaagttgttgatgatgagt 13440745  T
Q  180 ccattacttttgaacactgtgtcaagcatca 210  Q
     | |||||||||| ||||||  |||||||||    
T  13440746 gctttacttttgagcactgtcccaagcatca 13440776  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 13448728 - 13448950
Alignment:
Q  2 gagccaactcaggcactcatgctcactctcagcaccctcgtttcccccacctgctttctctagagtggttctccaaata---gaagatggaccaagatgc 98  Q
    |||||||||||||| ||| ||| || || |||||||||| |||||||   ||| ||||||| |||  ||| | | ||||   |||| |||||||||||||    
T  13448728 gagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgc 13448827  T
Q  99 caagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattacttttgaacactg 198  Q
    ||| |||||||||| | || |||||| |||||||| || ||||||||||||||||||||| |||||||||||| ||| |   | |||||||| | ||| |    
T  13448828 caaaccttgtgacccgtggctttctcgtagtgttgtatgcactcttctccatcaagttcactgaagttgttgatgattagtgctttacttttaagcaccg 13448927  T
Q  199 tgtcaagcatcagtcctatgaat 221  Q
    | |||||||||| ||| ||||||    
T  13448928 tctcaagcatcattcccatgaat 13448950  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 13455280 - 13455371
Alignment:
Q  80 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttga 171  Q
    ||||| |||||||| ||||||| ||||||||||||  ||||| || |||||||| || |||||||||||||||| |||| ||||||||||||    
T  13455280 agaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcactcttctccatcaaattcactgaagttgttga 13455371  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 12589899 - 12589787
Alignment:
Q  80 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 179  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||  ||||||||||||  ||||||||| || ||||      
T  12589899 agaagctggaccaagatgccaagccttgtgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagt 12589800  T
Q  180 ccattacttttga 192  Q
    |||||||||||||    
T  12589799 ccattacttttga 12589787  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 48958600 - 48958723
Alignment:
Q  87 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaagccattac 186  Q
    ||||||||||||||| |||||||||| | | ||||||  |||||||  || |||||||| ||||||||||||||||||||||||| |||||  || ||||    
T  48958600 ggaccaagatgccaaaccttgtgacccgtgattttcttgtagtgttcgatgcactcttcaccatcaagttcaatgaagttgttgatgatgagtcccttac 48958699  T
Q  187 ttttgaacactgtgtcaagcatca 210  Q
    ||||||  | ||| ||||||||||    
T  48958700 ttttgaggattgtctcaagcatca 48958723  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 48962746 - 48962837
Alignment:
Q  86 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatga 177  Q
    |||||| |||||||||||||||||||| | ||||||||| |||||||  || |||||||| || |||||||||  |||||||||||| ||||    
T  48962746 tggaccgagatgccaagccttgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatga 48962837  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 48912075 - 48911950
Alignment:
Q  80 agaagatggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgacgatgaag 179  Q
    ||||| |||||||||||||||||| |||||||  |  |||||||| |||||||  ||| ||||||| || |||||||||   || |||||||| | ||      
T  48912075 agaagctggaccaagatgccaagctttgtgacaagtagttttctcgtagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaaggatt 48911976  T
Q  180 ccattacttttgaacactgtgtcaag 205  Q
    || ||||||||||| ||||| |||||    
T  48911975 ccgttacttttgaaaactgtctcaag 48911950  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 48974614 - 48974652
Alignment:
Q  139 actcttctccatcaagttcaatgaagttgttgacgatga 177  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  48974614 actcttctccatcaagctcagtgaagttgttgacgatga 48974652  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 12641205 - 12641122
Alignment:
Q  86 tggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgtt 169  Q
    ||||||||||||||||||||||| |||   |||||||||||||||||  || || ||||| |||||||||||||  ||||||||    
T  12641205 tggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttgtt 12641122  T

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Target: scaffold0536 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 6234 - 6163
Alignment:
Q  87 ggaccaagatgccaagccttgtgacctgcggttttctcatagtgttgaatacactcttctccatcaagttca 158  Q
    ||||||||||||||||| ||||||||||  |||||||| |||||||  ||  ||||||| || |||||||||    
T  6234 ggaccaagatgccaagctttgtgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttca 6163  T

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