View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13701_high_4 (Length: 495)
Name: NF13701_high_4
Description: NF13701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13701_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 5 - 450
Target Start/End: Complemental strand, 36733976 - 36733531
Alignment:
| Q |
5 |
tgactcaatgtgttatcaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccat |
104 |
Q |
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| T |
36733976 |
tgactcaatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatcttgtgagccat |
36733877 |
T |
|
| Q |
105 |
atgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaac |
204 |
Q |
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| T |
36733876 |
atgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaac |
36733777 |
T |
|
| Q |
205 |
acaaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttatgaagtccttggtgaggtattgaaccaataaggtgaagatgt |
304 |
Q |
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| T |
36733776 |
acaaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttgtgaagtccttggtgaggtattgaaccaataaggtgaagatgt |
36733677 |
T |
|
| Q |
305 |
ccaatgattggtaaagataatggacttggaggtaacttcgatttcttgtattttcttgtgagtatggcttttacaaaaattgttgatactagccatatga |
404 |
Q |
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| T |
36733676 |
ccaatgattggtaaagataatggacttggaggtaacttcgatttcttgtattttcttgtgagtatggcttttacaaaaattgttgatactagccatatga |
36733577 |
T |
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| Q |
405 |
tgaaaagtaagatgtaaccttggtaatcaaccatgttattgtaacc |
450 |
Q |
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| T |
36733576 |
tgaaaagtaagatgtaaccttggtaatcaaccatgttattgtaacc |
36733531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 266
Target Start/End: Complemental strand, 25168224 - 25168110
Alignment:
| Q |
152 |
gtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttg |
251 |
Q |
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|||||||||||||||||||||||||| || |||||| | |||| ||| | |||||| || || ||||||||||| || ||||| |||||||||| |
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| T |
25168224 |
gtttcgtgagttttaagaaactctttggctatttctggatttgaagttactatacaaggtatagagcctaggaaaagttgaattatgggtccatattgaa |
25168125 |
T |
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| Q |
252 |
ttgaaagtttatgaa |
266 |
Q |
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| T |
25168124 |
ttgaaagcttatgaa |
25168110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 246
Target Start/End: Complemental strand, 24939620 - 24939511
Alignment:
| Q |
137 |
cggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtatta |
236 |
Q |
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| T |
24939620 |
cggttggagaaggaagtttcgtgagttttaagaaactctttggctatttttggacttgaagttactatacaaggaacggagcctaggaaaagttgcatta |
24939521 |
T |
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| Q |
237 |
taggtccata |
246 |
Q |
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| T |
24939520 |
tgggtccata |
24939511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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