View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13701_low_2 (Length: 905)
Name: NF13701_low_2
Description: NF13701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13701_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 708; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 136 - 887
Target Start/End: Complemental strand, 10600545 - 10599794
Alignment:
| Q |
136 |
aatctatgtaagaattgaaacatgccaagcctaagcctatctcttcctcttccttctcctcacataaatctcaactcacaacaaaactttaaccatttca |
235 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10600545 |
aatctatgtaagaattaaaacatgccaagcctaagcctatctcttcctcttccttctcctcacatcaatctcaactcacaacaaaactttaaccatttca |
10600446 |
T |
|
| Q |
236 |
acaacccacaacaacttcacaaagccattacaaccttaaacctaacagacacagaatcaacccataacaacaaactcataacctcttctcttctccttaa |
335 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10600445 |
acaacccacaacaactccacaaagccattacaaccttaaacctaacagacacagaatcaacccataacaacaaactcataacctcttcacttctccttaa |
10600346 |
T |
|
| Q |
336 |
acaatgcatccgaaccaaaaacacccacctcggcaaactccttcatcacaaactcaccacctcaaatctccccctcgacaccctcctcttgaactccctc |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10600345 |
acaatgcatccgaaccaaaaacacccacctcggcaaactccttcatcacaaactcaccacctcaaatctccccctcgacaccctcctcttgaactccctc |
10600246 |
T |
|
| Q |
436 |
attaccctctactccaaatcaaacgaccctataaccgctttttccattttccaatccatggaaaattccaaacgcgatgttgtttcatatagttcaatca |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10600245 |
attaccctctactccaaatcaaacgaccctataaccgctttttccattttccaatccatggaaaattccaaacgcgatgttgtttcatatagttcaatca |
10600146 |
T |
|
| Q |
536 |
tttcttgctttgcaaacaatcaaaattgcttgaaagcagttgagatgtttgatcagttgcttttacaagacggggtttatccaaatgagtattgttttac |
635 |
Q |
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| T |
10600145 |
tttcttgctttgcaaacaatcgaaattgcttgaaagcagttgagatgtttgatcagttgcttttacaagacggggtttatccgaatgagtattgttttac |
10600046 |
T |
|
| Q |
636 |
tgctgtgatacgggcttgtttgaaaggtgggttttttaaaactgggttgtgtttgtttggatttgttttgaagacggggtattttgattcgcatgtttgt |
735 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10600045 |
tgctgtgatacgggcgtgtttgaaaggcgggttttttaaaactgggttgtgtttgtttggatttgttttgaagacggggtattttgattcgcatgtttgt |
10599946 |
T |
|
| Q |
736 |
gttggttgtgaattgattgatatgtttgttaaaggtggtagtttagcagattttgagtctgcacataaggtgtttgataaaatgcgtgagaagaatgttg |
835 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10599945 |
gttggttgtgaattgattgatatgtttgttaaaggttgtagtttagcagatttagagtctgcacgtaaggtgtttgataaaatgcgtgagaagaatgttg |
10599846 |
T |
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| Q |
836 |
ttacgtggactttgatgattactaggttagctcaatatggttataatgatga |
887 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10599845 |
ttacgtggactttgatgattactaggttagctcaatatggttataatgatga |
10599794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 10616853 - 10616748
Alignment:
| Q |
27 |
taattgacactgacaaatgtacattcaannnnnnnattttcttacattattattgatcttgatgtgtcggtatgaatatcatttctgatatttaatatct |
126 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |
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| T |
10616853 |
taatcgacactgacaaatgtacattctgttttttcattttcttacattattattgatgttgatgtgtcactatgaatatcatttctgatattt-atatct |
10616755 |
T |
|
| Q |
127 |
gcgttga |
133 |
Q |
| |
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||||||| |
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| T |
10616754 |
gcgttga |
10616748 |
T |
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