View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13701_low_3 (Length: 803)
Name: NF13701_low_3
Description: NF13701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13701_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 743; Significance: 0; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 19 - 785
Target Start/End: Complemental strand, 10557518 - 10556752
Alignment:
| Q |
19 |
gttactgctgatatcaagttttctaagggtagaagcatttgcaacagaagtgggcattagacccgagaattgattgacaccaatttcaaacactttgaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10557518 |
gttactgctgatatcaagttttctaagggtagaagcatttgcaacagaagtaggcattagacccgagaattgattgacaccaatttcaaacactttgaga |
10557419 |
T |
|
| Q |
119 |
ttggggagggagttgaacatcttgggtggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaag |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10557418 |
ttggggagggagttgaacatgttgggtggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaag |
10557319 |
T |
|
| Q |
219 |
gaactgtaccagatagtttgttgagccccaatgctattttagtcaagtgttttaggcgacatatttctcggggaatatctccctctaagttgttacgaga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10557318 |
gaactgtaccagatagtttgttgagccccaatgctattttagtcaagtgttttaggcgacatatttcttggggaatatctccctctaagttgttacgaga |
10557219 |
T |
|
| Q |
319 |
aatggaaagagttgttaagactgaaagattacctatgaatggtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaaga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10557218 |
aatggaaagagttgttaagactgaaagattacctatgaatggtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaaga |
10557119 |
T |
|
| Q |
419 |
gagcctatttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccag |
518 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10557118 |
gagcctatttcaattggtatttttccgatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccag |
10557019 |
T |
|
| Q |
519 |
agaatgagttattggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgtg |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10557018 |
agaatgagttattggagagatagagttcctgtaattgtaacaactgacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgtg |
10556919 |
T |
|
| Q |
619 |
tctgagaaaagtaagattggcagcatgagaagataaggatccatgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcat |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10556918 |
tctgagaaaagtaagattggcagcatgagaagataaggatccatgcaacttatatccaggtaacttcaactcagtaactctttgatgcatggtgttgcat |
10556819 |
T |
|
| Q |
719 |
gtgattccataccagttgcaaaaatggatagaaccattccaagaatcaaggattctatgtgggtcat |
785 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10556818 |
gtgattccataccagttgcaaaaatggatagaaccattccaagaatcaaggattctatgtgggtcat |
10556752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 26 - 784
Target Start/End: Complemental strand, 10549384 - 10548636
Alignment:
| Q |
26 |
ctgatatcaagttttctaagggtagaagcatttgcaacagaagtgggcattagacccgagaattgattgacaccaatttcaaacactttgagattgggga |
125 |
Q |
| |
|
||||||||||||| | ||| |||||||||||| |||||||| |||| |||||||| || | |||||| ||| ||| |||| ||||| |||| |||| |
|
|
| T |
10549384 |
ctgatatcaagttctgcaagtgtagaagcattttcaacagaaatgggaattagacctgaaatttgattaccactgattgcaaatactttaagataaggga |
10549285 |
T |
|
| Q |
126 |
gggagttgaacatcttgggtggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaaggaactgt |
225 |
Q |
| |
|
| | ||| ||||| |||| |||||| |||||||| | ||||| | ||||| ||| | |||| |||||||||||| ||||||||||| |||||| ||| |
|
|
| T |
10549284 |
gagtgttaaacatgttggatggaagtgagccatcaaactgatttgatgcagctgagatcatagtaagagatgacatattgtaaagacacaaaggaaatgt |
10549185 |
T |
|
| Q |
226 |
accagatagtttgttgagccccaatgctattttagtcaagtgttttaggcgacatatttctcggggaatatctccctctaagttgttacgagaaatggaa |
325 |
Q |
| |
|
|||||||| |||||||| | ||| | | || | ||||| ||| || |||||||||||| | |||||||||||||| || |||||| ||||| ||| |
|
|
| T |
10549184 |
accagatattttgttgaccaccattaccatcactgccaagtttttgagacgacatatttcttgtggaatatctccctccaaattgttataagaaactgaa |
10549085 |
T |
|
| Q |
326 |
agagttgttaagactgaaagattacctatgaatggtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaagagagccta |
425 |
Q |
| |
|
| | | | || ||||||||| |||| |||||| ||||||| ||| ||||| ||||| | |||| | |||| || ||||||||||||||| || | |
|
|
| T |
10549084 |
aaacctatcaaatatgaaagattccctaagaatggagggactcttccagtcaaaaggtttcgtgtaacactaaattgtttaagcttttgaagagacccaa |
10548985 |
T |
|
| Q |
426 |
tttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaatga |
525 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10548984 |
tttcaattggtatttttccaatcaaattgttccctctcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaacga |
10548885 |
T |
|
| Q |
526 |
gttattggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgtgtctgaga |
625 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10548884 |
gttattggcgagatagagttcctttaattgtaacaactgacccaactcttgggggatttttcgagagaatttgttgtctgcaaggttgacgtgtctgaga |
10548785 |
T |
|
| Q |
626 |
aaagtaagattggcagcatgagaagataaggatccatgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattc |
725 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| ||| |||| ||||||| |
|
|
| T |
10548784 |
aaagtgagattggcgacatgagaagataaagatccatgcaacttatatccaggtaacttcaacgctgtaactctttga----------tgcacgtgattc |
10548695 |
T |
|
| Q |
726 |
cataccagttgcaaaaatggatagaaccattccaagaatcaaggattctatgtgggtca |
784 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10548694 |
catgccagttgcaaaaatggatagaaccattccaagaatcaagcattctatgtgggtca |
10548636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 402 - 765
Target Start/End: Original strand, 19607859 - 19608222
Alignment:
| Q |
402 |
cttgaagcttttgaagagagcctatttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtt |
501 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||| ||||| || ||| | | |||| | |||||||| |
|
|
| T |
19607859 |
cttgaagcttttgaagagaggtgatttcaattgggatttttccaatcaaattgttccctctcaagtataagccttcaagatcggaacagtgggtcaagtt |
19607958 |
T |
|
| Q |
502 |
tgtaggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttccagagaatttgttg |
601 |
Q |
| |
|
| ||||||| || || |||| | |||||||| |||| ||||| || |||||||||||| | || | || | ||||| |||||| |||| || || |
|
|
| T |
19607959 |
tataggaatctcccctgagagggtgttattggtgagaaggagttgttgcaattgtaacaaccttccaagttcatttgggatgtttccaaagaaattattc |
19608058 |
T |
|
| Q |
602 |
tctgcaaggttgacgtgtctgagaaaagtaagattggcagcatgagaagataaggatccatgcaacttatatccaggtaacttcaactcagtaactctat |
701 |
Q |
| |
|
| ||||||||| | || ||||||||||| ||||| || ||||| ||||| ||||||||||| | |||||| ||| ||||| || ||||||| | |
|
|
| T |
19608059 |
tttgcaaggtttaagtttctgagaaaagagagattaccaatatgagtagatattgatccatgcaattcatatccttgtaggttcaattctataactcttt |
19608158 |
T |
|
| Q |
702 |
gatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattccaagaatc |
765 |
Q |
| |
|
||||||||| | ||||||||||||||| ||| |||||||| || | |||| |||||||||||| |
|
|
| T |
19608159 |
gatgcatggggctgcatgtgattccatgccaattgcaaaagtgtgttgaactattccaagaatc |
19608222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 655 - 765
Target Start/End: Original strand, 9838575 - 9838685
Alignment:
| Q |
655 |
ggatccatgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaacca |
754 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||| | |||||||| |||||||||| ||||||||||||||||| ||||||||| || ||||||||| | |
|
|
| T |
9838575 |
ggatccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaa |
9838674 |
T |
|
| Q |
755 |
ttccaagaatc |
765 |
Q |
| |
|
||||||||||| |
|
|
| T |
9838675 |
ttccaagaatc |
9838685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 403 - 768
Target Start/End: Original strand, 10749010 - 10749375
Alignment:
| Q |
403 |
ttgaagcttttgaagagagcctatttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagttt |
502 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||||| ||||||| ||| ||||| | || |||| ||| || ||| | |||| |||||||||| |
|
|
| T |
10749010 |
ttgaagctttttcaaagagccaatttcaattggtattttgccaatcacattgttccctcccacatttaagcctttgagattggagcaatatgtcaagttt |
10749109 |
T |
|
| Q |
503 |
gtaggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttccagagaatttgttgt |
602 |
Q |
| |
|
| |||||||||||| | ||| ||||||||| ||||| |||| || ||||||| |||| ||||||||||| ||||||| |||| ||| | |||| |
|
|
| T |
10749110 |
gaaggaatttctcctgcgaacgagttattgatgagatcaagttgttgcaattgtagcaaccgacccaactcttctgggatttctccaaggaagtcattgt |
10749209 |
T |
|
| Q |
603 |
ctgcaaggttgacgtgtctgagaaaagtaagattggcagcatgagaagataaggatccatgcaacttatatccaggtaacttcaactcagtaactctatg |
702 |
Q |
| |
|
| ||| ||| | | | |||||||||| |||||| || |||| | ||||| |||||||| || | |||||| ||| ||||||| |||||||| | |
|
|
| T |
10749210 |
ttccaatgtttagatttgtgagaaaagtgagattgccaacatggggtgataaagatccatgtaaatgatatccttctaagttcaactttgtaactctttc |
10749309 |
T |
|
| Q |
703 |
atgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattccaagaatcaag |
768 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
10749310 |
atgcatgggtttgcatgtgattccatgccacttgcagaagtggatggaagaattccaagattcaag |
10749375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 403 - 594
Target Start/End: Complemental strand, 10609924 - 10609733
Alignment:
| Q |
403 |
ttgaagcttttgaagagagcctatttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagttt |
502 |
Q |
| |
|
||||||||||| | |||||| |||||||| |||||||| ||||||||||| || || | ||| ||| | ||| || ||| | |||| ||||| |||| |
|
|
| T |
10609924 |
ttgaagctttttcaaagagccaatttcaatcggtattttgccaatcaaattgtttcctcccaaacgtaactctttgagattggagcaatgtgtcaggttt |
10609825 |
T |
|
| Q |
503 |
gtaggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttccagagaa |
594 |
Q |
| |
|
|||||||||||||| | || ||||||||| |||||| |||| || ||||||| ||||| ||||||||| || |||||| ||||| |||| |
|
|
| T |
10609824 |
gtaggaatttctcctgcaaaagagttattgatgagataaagttgttgcaattgtagcaactgacccaactcctgcgggattgttccatagaa |
10609733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 402 - 510
Target Start/End: Complemental strand, 7191217 - 7191109
Alignment:
| Q |
402 |
cttgaagcttttgaagagagcctatttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtt |
501 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| ||||| | || ||| ||| ||||| ||||| ||| ||| || | ||| | |||||||| |
|
|
| T |
7191217 |
cttgaagcttttgaagagagcttattccaattggtattttaccaataagatgatttccagtcaagtataagaattcaagattagagcaactcgtcaagtt |
7191118 |
T |
|
| Q |
502 |
tgtaggaat |
510 |
Q |
| |
|
||||||||| |
|
|
| T |
7191117 |
tgtaggaat |
7191109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 9838110 - 9838226
Alignment:
| Q |
190 |
aagagatgacatgttgtaaagacatgaaggaactgtaccagatagtttgttgagccccaatgctattttagtcaagtgttttaggcgacatatttctcgg |
289 |
Q |
| |
|
|||||||||||| ||||| ||||| | |||| |||||| |||||||||||| || || |||| | |||||| ||||||||||||||||||||| |
|
|
| T |
9838110 |
aagagatgacatattgtagagacaaggtggaaatgtacctgatagtttgttgtcagtcactgttattattatcaagttttttaggcgacatatttctcgt |
9838209 |
T |
|
| Q |
290 |
ggaatatctccctctaa |
306 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9838210 |
ggaatatctccctctaa |
9838226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 693 - 768
Target Start/End: Original strand, 10742987 - 10743062
Alignment:
| Q |
693 |
taactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattccaagaatcaag |
768 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||| ||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
10742987 |
taactctttgatgcatggggttgcatgtgattccataccacttgcagaagtggatggaagaattccaagactcaag |
10743062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 768
Target Start/End: Original strand, 11050120 - 11050232
Alignment:
| Q |
656 |
gatccatgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccat |
755 |
Q |
| |
|
||||||||||||| |||||| || ||||||| |||||||| ||||||||| | ||||||||||||||| ||| ||||| |||||||| ||| || |
|
|
| T |
11050120 |
gatccatgcaactgatatccttctaggttcaactttgtaactctttgatgcatgaggctgcatgtgattccatgccacttgcagaaatggatggaagaat |
11050219 |
T |
|
| Q |
756 |
tccaagaatcaag |
768 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
11050220 |
tccaagattcaag |
11050232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 649 - 768
Target Start/End: Original strand, 10765356 - 10765475
Alignment:
| Q |
649 |
agataaggatccatgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggata |
748 |
Q |
| |
|
|||||| |||||||| |||| |||||| | || |||||||| ||||| || ||||||||| | ||||||||||||||| ||| || ||||| ||||| |
|
|
| T |
10765356 |
agataaagatccatgtaactgatatcctgctaggttcaactctgtaaccctttgatgcatgaggctgcatgtgattccatgccactttcaaaagtggatg |
10765455 |
T |
|
| Q |
749 |
gaaccattccaagaatcaag |
768 |
Q |
| |
|
||| ||||||||| ||||| |
|
|
| T |
10765456 |
gaagaattccaagattcaag |
10765475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 19607603 - 19607698
Alignment:
| Q |
146 |
ggaagagagccatctatttgattggctgcagatgaaaagatagcaagagatgacatgttgtaaagacatgaaggaactgtaccagatagtttgttg |
241 |
Q |
| |
|
||||||||||||| | ||||| ||||||| ||| | |||| |||||||||||| ||| ||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
19607603 |
ggaagagagccattaaagtgattagctgcagctgatatcatagtaagagatgacatattgaaaagacaagaaggaaatgtaccagataatttgttg |
19607698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 768
Target Start/End: Original strand, 10719173 - 10719258
Alignment:
| Q |
683 |
ttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattccaagaatcaag |
768 |
Q |
| |
|
|||||||| |||||||| | |||||||| | ||||||||||||||| ||| ||||| || ||||| ||| ||||||||| ||||| |
|
|
| T |
10719173 |
ttcaactctgtaactctttcatgcatggggctgcatgtgattccatgccacttgcagaagtggatggaagaattccaagattcaag |
10719258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 741
Target Start/End: Original strand, 10590668 - 10590760
Alignment:
| Q |
649 |
agataaggatccatgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaa |
741 |
Q |
| |
|
||||| ||||||||||||||| ||||| | | |||||||| |||||||| |||||| ||| ||||| ||||||||| |||||||||||| |
|
|
| T |
10590668 |
agatatggatccatgcaacttgtatcctgacagcttcaacttggtaactctttgatgcttgggactgcatatgattccattccagttgcaaaa |
10590760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 765
Target Start/End: Complemental strand, 10599057 - 10598941
Alignment:
| Q |
649 |
agataaggatccatgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggata |
748 |
Q |
| |
|
||||| ||||||||||||||| || | || ||| |||||| |||||||| |||||| ||| |||||| ||||||||| ||| |||||||| || | |
|
|
| T |
10599057 |
agatatggatccatgcaacttgtaacttggcaacctcaactttgtaactctttgatgcttgggattgcatatgattccatgccaattgcaaaagtgagtt |
10598958 |
T |
|
| Q |
749 |
gaaccattccaagaatc |
765 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
10598957 |
gaactattccaagaatc |
10598941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 563
Target Start/End: Original strand, 10654198 - 10654357
Alignment:
| Q |
404 |
tgaagcttttgaagagagcctatttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtttg |
503 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||||||| ||||||| || ||| ||| ||| ||||||||| ||| | | ||| |||||||||||| |
|
|
| T |
10654198 |
tgaagcttatgaagagagctaattcgaattggtattttaccaatcagatgatttccagataagaataagtattcaagatcagagcaacttgtcaagtttg |
10654297 |
T |
|
| Q |
504 |
taggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaacaact |
563 |
Q |
| |
|
||||||| || || | | |||||||||||||||| ||||| ||| ||| || |||||| |
|
|
| T |
10654298 |
taggaatctcccctgtcattgagttattggagagaacgagttgctgcaatcgtgacaact |
10654357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 602
Target Start/End: Original strand, 10742782 - 10742896
Alignment:
| Q |
488 |
caatttgtcaagtttgtaggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttc |
587 |
Q |
| |
|
|||| ||||||||||||||||||||| || | || |||||||| | ||| | |||| || ||||||| ||||| |||||||||||| || |||| || |
|
|
| T |
10742782 |
caatatgtcaagtttgtaggaatttcacctgcaaaagagttattagtaagaaaaagttgttgcaattgtagcaactgacccaactcttgtggaatttctc |
10742881 |
T |
|
| Q |
588 |
cagagaatttgttgt |
602 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
10742882 |
catagaatgtgttgt |
10742896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 260 - 768
Target Start/End: Complemental strand, 12905543 - 12905035
Alignment:
| Q |
260 |
gtcaagtgttttaggcgacatatttctcggggaatatctccctctaagttgttacgagaaatggaaagagttgttaagactgaaagattacctatgaatg |
359 |
Q |
| |
|
||||||||||| ||| |||||||||| | |||||||||||||| || ||||||| ||||| || ||| ||||||| ||||| ||| |||||||||| |
|
|
| T |
12905543 |
gtcaagtgtttgaggaaacatatttcttgtggaatatctccctcaaaattgttaccagaaactgatagacgtgttaagcttgaaatatttcctatgaatg |
12905444 |
T |
|
| Q |
360 |
gtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaagagagcctatttcaattggtatttttccaatcaaattattccc |
459 |
Q |
| |
|
|||| ||| ||| | || ||||||| | |||| ||| | ||||||||||| | |||||| |||||| |||||||||| ||||| | || ||||| |
|
|
| T |
12905443 |
aagggattccaccggttaacttgtttctccaaacactcattgtttgaagctttttcaaagagccgatttcagttggtattttaccaatgagatggttccc |
12905344 |
T |
|
| Q |
460 |
actcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaac |
559 |
Q |
| |
|
| |||| | || | || || ||| | |||| ||||| |||||||||||| || || || || |||||| |||| |||| || || |||| | |
|
|
| T |
12905343 |
attcaaatacaataacttgagattggagcaatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaataagttgttgcaaatgtagc |
12905244 |
T |
|
| Q |
560 |
aacttacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgtgtctgagaaaagtaagattggcagcatgagaagataaggatc |
659 |
Q |
| |
|
|||| |||||| || || || |||| |||| |||| |||||||||| || || ||| | | |||||||| ||||||| | |||| | |||||| |||| |
|
|
| T |
12905243 |
aactgacccaaatcctgaggaatttctccaaagaagttgttgtctgtaatgtcgacacttttcagaaaagtgagattggaaacatggggagataaagatc |
12905144 |
T |
|
| Q |
660 |
catgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattcca |
759 |
Q |
| |
|
|||| |||| ||||| || ||||||| ||||||| | |||||||| | ||||||||||||||| ||| ||||| |||||||| ||| |||||| |
|
|
| T |
12905143 |
catgtaactgatatctttctaggctcaactctgtaactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattcca |
12905044 |
T |
|
| Q |
760 |
agaatcaag |
768 |
Q |
| |
|
||| ||||| |
|
|
| T |
12905043 |
agattcaag |
12905035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 331 - 674
Target Start/End: Complemental strand, 12946927 - 12946584
Alignment:
| Q |
331 |
tgttaagactgaaagattacctatgaatggtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaagagagcctatttca |
430 |
Q |
| |
|
||||||| ||||||||| || ||||||| |||| ||||||||| ||| ||||| | ||||| ||| | |||||| ||| | | |||||| |||||| |
|
|
| T |
12946927 |
tgttaagcttgaaagatttccaatgaatgaagggattcctccgattaaattgtttttcgcaacagtcattgcttgaaccttcttcaaagagccgatttca |
12946828 |
T |
|
| Q |
431 |
attggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaatgagttat |
530 |
Q |
| |
|
|||||||||| || || | || ||||||||||| | || |||| || ||| |||||| ||||| |||||||||||| || || | || ||||||| |
|
|
| T |
12946827 |
gttggtattttaccgatgagatggttcccactcaaaaacaaaaatttgagtttggaacaatatgtcaggtttgtaggaatctcacctgcaaaagagttat |
12946728 |
T |
|
| Q |
531 |
tggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgtg-tctgagaaaag |
629 |
Q |
| |
|
|| |||| | |||| || || |||| ||||| ||||||||| || || |||| |||| |||| ||||||||| ||| ||||| ||| | | ||||||| |
|
|
| T |
12946727 |
tgttgagaaaaagttgttgcaaatgtagcaactgacccaactcctgtggaatttctccaaagaagttgttgtctccaatgttga-gtgttttcagaaaag |
12946629 |
T |
|
| Q |
630 |
taagattggcagcatgagaagataaggatccatgcaacttatatc |
674 |
Q |
| |
|
| ||||||| | |||| | |||||| |||||||| |||| ||||| |
|
|
| T |
12946628 |
tgagattggaaacatggggagataaagatccatgtaactgatatc |
12946584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 441
Target Start/End: Complemental strand, 12956435 - 12956254
Alignment:
| Q |
260 |
gtcaagtgttttaggcgacatatttctcggggaatatctccctctaagttgttacgagaaatggaaagagttgttaagactgaaagattacctatgaatg |
359 |
Q |
| |
|
||||||||||| || |||||||||| | |||||||||||||| || |||||||||||| || ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
12956435 |
gtcaagtgtttgcagcaacatatttcttgtggaatatctccctcaaaattgttacgagaagctgatagacgtgttaagcttgaaagatttcctatgaatg |
12956336 |
T |
|
| Q |
360 |
gtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaagagagcctatttcaattggtatttt |
441 |
Q |
| |
|
|||| ||| || | || ||||||| | |||| ||| | ||||||||||| | |||||| |||||| |||||||||| |
|
|
| T |
12956335 |
aagggattccaccagttaacttgtttctccaaacagtcattctttgaagctttttcaaagagccgatttcagttggtatttt |
12956254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 768
Target Start/End: Complemental strand, 12897498 - 12897414
Alignment:
| Q |
684 |
tcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattccaagaatcaag |
768 |
Q |
| |
|
||||||| ||||||| | |||||||| | ||||||||||||||| ||| ||||| |||||||| ||| ||||||||| ||||| |
|
|
| T |
12897498 |
tcaactctgtaactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattcaag |
12897414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 260 - 768
Target Start/End: Original strand, 17925258 - 17925766
Alignment:
| Q |
260 |
gtcaagtgttttaggcgacatatttctcggggaatatctccctctaagttgttacgagaaatggaaagagttgttaagactgaaagattacctatgaatg |
359 |
Q |
| |
|
||||||||||| ||| |||||||||| | |||||||||||||| || |||||| ||| | || ||| ||||||| ||||||||| |||||||||| |
|
|
| T |
17925258 |
gtcaagtgtttgcggcaacatatttcttgtggaatatctccctcaaaattgttaagagcagctgatagacgtgttaagcatgaaagatttcctatgaatg |
17925357 |
T |
|
| Q |
360 |
gtgggactcctccgatcaaactgtttcttccaacattcaattcttgaagcttttgaagagagcctatttcaattggtatttttccaatcaaattattccc |
459 |
Q |
| |
|
|||| |||||| | ||| |||| ||||| ||| ||||||| |||| | |||||| |||||| |||||||||| ||||| | || ||||| |
|
|
| T |
17925358 |
aagggattcctccagttaaattgttatgcgcaacagtcatggcttgaagttttttcaaagagccgatttcagttggtattttaccaatgagatggttccc |
17925457 |
T |
|
| Q |
460 |
actcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttctccagagaatgagttattggagagatagagttcctgtaattgtaac |
559 |
Q |
| |
|
|||||| | || |||| || || |||||| ||||| |||||||||||| || || || || |||||| |||| | |||| ||| || |||| | |
|
|
| T |
17925458 |
actcaaaaacaataatttgagattagaacaatatgtcaggtttgtaggaatctcacctacaaaagaattattgctgagaaaaagttgctgcaaatgtagc |
17925557 |
T |
|
| Q |
560 |
aacttacccaactcttgggggatttttccagagaatttgttgtctgcaaggttgacgtgtctgagaaaagtaagattggcagcatgagaagataaggatc |
659 |
Q |
| |
|
|||| ||||||||| || || |||| |||| |||| ||||||||| ||| || || | | |||||||| |||||| | |||| | |||||| |||| |
|
|
| T |
17925558 |
aactgacccaactcctgtggaatttctccaaagaagttgttgtctccaatgtcgagagttttcagaaaagtgagattgcaaacatggggagataaagatc |
17925657 |
T |
|
| Q |
660 |
catgcaacttatatccaggtaacttcaactcagtaactctatgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattcca |
759 |
Q |
| |
|
|||| |||| ||||| || ||||||| ||||||| | |||||||| | ||||||||||||||| ||| ||||| |||||||| ||| |||||| |
|
|
| T |
17925658 |
catgtaactgatatctttttaggctcaactctgtaactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattcca |
17925757 |
T |
|
| Q |
760 |
agaatcaag |
768 |
Q |
| |
|
||| ||||| |
|
|
| T |
17925758 |
agattcaag |
17925766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 594
Target Start/End: Original strand, 31469166 - 31469345
Alignment:
| Q |
415 |
aagagagcctatttcaattggtatttttccaatcaaattattcccactcaaggataagtatttaaggttgaaacaatttgtcaagtttgtaggaatttct |
514 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| | ||| ||||| |||| |||||| |||||| || || || ||| |||||||||||||||||| |
|
|
| T |
31469166 |
aagagagccaatttcaattggtattctgccaacaagattgttcccttgcaagaataagtctttaagattcaacaaacttgacaagtttgtaggaatttcc |
31469265 |
T |
|
| Q |
515 |
ccagagaatgagttattggagagatagagttcctgtaattgtaacaacttacccaactcttgggggatttttccagagaa |
594 |
Q |
| |
|
||| ||||||||||| | ||| || |||| |||||||||| || ||| ||| ||||| |||||| ||||| |||| |
|
|
| T |
31469266 |
ccaaccaatgagttatttgtgaggtaaagtttttgtaattgtactaaactacacaattcttgtgggattgttccatagaa |
31469345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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