View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13701_low_4 (Length: 675)

Name: NF13701_low_4
Description: NF13701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13701_low_4
NF13701_low_4
[»] chr8 (16 HSPs)
chr8 (14-659)||(43271031-43271651)
chr8 (20-156)||(17700080-17700216)
chr8 (20-156)||(20824899-20825035)
chr8 (41-156)||(37434363-37434478)
chr8 (20-156)||(42176959-42177095)
chr8 (42-156)||(13878891-13879005)
chr8 (20-156)||(25090987-25091122)
chr8 (50-144)||(41664784-41664878)
chr8 (50-143)||(32267184-32267277)
chr8 (50-146)||(7925016-7925112)
chr8 (50-144)||(8300433-8300527)
chr8 (50-144)||(9923231-9923325)
chr8 (50-135)||(172464-172549)
chr8 (20-121)||(8902427-8902528)
chr8 (87-156)||(10530332-10530401)
chr8 (87-128)||(24794413-24794454)
[»] chr2 (10 HSPs)
chr2 (20-156)||(14440344-14440480)
chr2 (20-146)||(33515621-33515747)
chr2 (20-156)||(12646121-12646257)
chr2 (49-128)||(28253349-28253428)
chr2 (49-130)||(36804748-36804829)
chr2 (49-128)||(28399982-28400061)
chr2 (42-128)||(35488459-35488545)
chr2 (87-123)||(12565214-12565250)
chr2 (21-73)||(13550718-13550770)
chr2 (21-73)||(13551171-13551223)
[»] chr6 (14 HSPs)
chr6 (20-156)||(17605738-17605874)
chr6 (20-156)||(10576654-10576790)
chr6 (20-156)||(21629526-21629662)
chr6 (20-156)||(17577120-17577258)
chr6 (32-137)||(20882456-20882561)
chr6 (49-153)||(13938347-13938451)
chr6 (50-144)||(2554236-2554330)
chr6 (50-144)||(24766830-24766924)
chr6 (50-156)||(15956396-15956502)
chr6 (42-128)||(21549470-21549556)
chr6 (33-94)||(502998-503059)
chr6 (87-128)||(14372423-14372464)
chr6 (28-72)||(26205949-26205993)
chr6 (59-115)||(33753616-33753672)
[»] chr5 (16 HSPs)
chr5 (20-156)||(10780801-10780937)
chr5 (20-156)||(8299586-8299722)
chr5 (20-156)||(25856843-25856979)
chr5 (42-156)||(27796106-27796220)
chr5 (40-155)||(27165370-27165485)
chr5 (20-153)||(33170258-33170391)
chr5 (20-135)||(42928731-42928846)
chr5 (50-144)||(23239013-23239107)
chr5 (50-144)||(30731730-30731824)
chr5 (50-135)||(27116598-27116683)
chr5 (50-146)||(42514350-42514446)
chr5 (50-144)||(28535092-28535185)
chr5 (50-144)||(35983207-35983301)
chr5 (42-128)||(38358089-38358175)
chr5 (49-128)||(35122138-35122217)
chr5 (28-94)||(22094716-22094782)
[»] chr3 (15 HSPs)
chr3 (20-156)||(12341659-12341795)
chr3 (20-156)||(19891277-19891413)
chr3 (20-146)||(48569453-48569579)
chr3 (50-144)||(34332231-34332325)
chr3 (20-153)||(962570-962703)
chr3 (50-146)||(2364907-2365003)
chr3 (20-137)||(3141451-3141568)
chr3 (50-144)||(19919645-19919739)
chr3 (20-156)||(20531457-20531591)
chr3 (49-153)||(16179576-16179680)
chr3 (51-144)||(10322987-10323080)
chr3 (59-115)||(19652202-19652258)
chr3 (61-120)||(43284791-43284850)
chr3 (49-128)||(45684805-45684884)
chr3 (87-128)||(14863897-14863938)
[»] scaffold1350 (1 HSPs)
scaffold1350 (20-156)||(144-280)
[»] chr4 (19 HSPs)
chr4 (20-156)||(48312694-48312830)
chr4 (20-156)||(55725110-55725246)
chr4 (42-146)||(54482573-54482677)
chr4 (50-144)||(19755897-19755991)
chr4 (50-144)||(19783815-19783909)
chr4 (20-153)||(46146277-46146410)
chr4 (50-146)||(23642005-23642101)
chr4 (50-146)||(23647663-23647759)
chr4 (50-144)||(1827956-1828050)
chr4 (50-144)||(15740850-15740944)
chr4 (50-139)||(19733402-19733491)
chr4 (49-126)||(26694557-26694634)
chr4 (28-94)||(8935682-8935748)
chr4 (36-94)||(19115052-19115110)
chr4 (87-128)||(42952937-42952978)
chr4 (51-144)||(47419435-47419528)
chr4 (21-73)||(3129476-3129528)
chr4 (87-139)||(5789513-5789565)
chr4 (20-120)||(11586638-11586738)
[»] chr7 (11 HSPs)
chr7 (20-123)||(31423202-31423305)
chr7 (50-144)||(11276664-11276758)
chr7 (50-146)||(4937542-4937638)
chr7 (50-144)||(17721265-17721359)
chr7 (50-128)||(29968604-29968682)
chr7 (20-139)||(39931017-39931136)
chr7 (50-144)||(234854-234948)
chr7 (49-139)||(36364145-36364235)
chr7 (42-128)||(18768030-18768116)
chr7 (20-75)||(37255358-37255413)
chr7 (42-128)||(34457590-34457676)
[»] scaffold0472 (1 HSPs)
scaffold0472 (50-138)||(3882-3970)
[»] scaffold0034 (1 HSPs)
scaffold0034 (50-146)||(105257-105353)
[»] chr1 (4 HSPs)
chr1 (50-146)||(6051233-6051329)
chr1 (50-144)||(35541664-35541758)
chr1 (40-128)||(47622509-47622597)
chr1 (28-94)||(25504460-25504526)


Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 14 - 659
Target Start/End: Original strand, 43271031 - 43271651
Alignment:
Q  14 catcatcaccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacaccc 113  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||    
T  43271031 catcaacaccctacaccacaaaccacccatatcatctaacaaccgccaacaccatttccccagtagggaaatgttaaactctctcaacctcctaacaccc 43271130  T
Q  114 aaccctccatactccctcctcaaacacaaagaactccaaccaaataaaaagatacggttaattttactactcgataaattaaaccgtagacatcacctga 213  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43271131 aacc-tccatactccctcctcaaacacaaa-aactccaaccaaataaaaagatacggttaattttactactcgataaattaaactgtagacatcacctga 43271228  T
Q  214 aatnnnnnnnngatacttaagctatagacatatattttcaaactcacgatcaaatcgaaatttatatcctagactctaggtactccatcattatcgtaat 313  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  43271229 aataaaaaaa-gatacttaagctatagacatatattttcaaactcacgatcaaatcgaaatttatatcctagattctaggtactcgatcattatcgtaat 43271327  T
Q  314 ggtacaccaattaccaannnnnnnncaactgccatgcatacgttgccatttatttgtcggtaggctaagatttccaaaagagaaatgattttcaaatatc 413  Q
    ||||| |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||          
T  43271328 ggtacgccaattaccaattttttttcaactgccatgcatacgttgccatttatttgtcggtaggctaagatttccaaaagagaagtgattttca------ 43271421  T
Q  414 aaaattttaatgtcaaacatcgcacgttttagttttagtgtgtannnnnnnnnnnnccatagattcgttccattaaagataatcatatttgagacaccat 513  Q
                   |||||||||| ||||||||||||||||||            |||||||||| |||||||||||||||||||||||||||||||||    
T  43271422 ---------------aacatcgcacattttagttttagtgtgtattttttctttttccatagattcattccattaaagataatcatatttgagacaccat 43271506  T
Q  514 taatcactaaaagcagacattcataataaaaattggaactttgatctacacattgtgagtttagtctctttgcttaaccaacccttagttggtaatttta 613  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43271507 taatcactaaaagcagacattcataataaaaattgaaactttgatctacacattgtgagtttagtctctttgcttaaccaaccctt-gttggtaatttta 43271605  T
Q  614 tcatgtattttttcaaaccttgttggcagttttactaccacatttg 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43271606 tcatgtattttttcaaaccttgttggcagttttactaccacatttg 43271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 17700080 - 17700216
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||  | ||||||||||||||||||||| ||||| ||||||||||||    
T  17700080 caccctactccacaaacctcccctatcaactaacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccct 17700179  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17700180 ccatactccctcctcaaacacaaagaacttcaaccaa 17700216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 20824899 - 20825035
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| ||||||||| |||||| || |||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||    
T  20824899 caccctactccacaaacctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccct 20824998  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  20824999 ccatactccctcctcaagcacacagaactccaaccaa 20825035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 37434478 - 37434363
Alignment:
Q  41 cctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacac 140  Q
    ||||||| |||||| ||||||||||||||| ||||  | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37434478 cctatcaactaacagccgccaacaccattttcccaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactccctcctcaaacac 37434379  T
Q  141 aaagaactccaaccaa 156  Q
    ||||||||||||||||    
T  37434378 aaagaactccaaccaa 37434363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 42177095 - 42176959
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||||||| |||||||| |||||||||| ||||| |||||| |||  | || |||||||||||||||||| | |||||||| || ||||    
T  42177095 caccctacgccacaaaccatccctatcaactaacaaccgtcaacatcatttctccaacaaaggaatgttaaactctctcaaccccctaacactcatccct 42176996  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||| ||||||||||||||||||||    
T  42176995 ccatactccctcctcatacacaaagaactccaaccaa 42176959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 13879005 - 13878891
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacaca 141  Q
    |||||| ||||||||||||||||||||||||| || | ||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||    
T  13879005 ctatcaactaacaaccgccaacaccatttccctagcaaagcaatgttaaacttgctcaatctccgaacacccaaccccccatactccctcctcaaacaca 13878906  T
Q  142 aagaactccaaccaa 156  Q
    |||||  ||||||||    
T  13878905 aagaatgccaaccaa 13878891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 25090987 - 25091122
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||  | |||||| ||||||||||| ||||||||||||| |  | |||||||||||||||||||||||||||||||||||| ||     
T  25090987 caccctacgccacaacccctctctatcaactaacaaccgctaacaccatttccctaacaaagcaatgttaaactctctcaatctcctaacacccaaacc- 25091085  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||| ||||||  ||||||||    
T  25091086 ccatactccctcctcaaacataaagaatgccaaccaa 25091122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 41664878 - 41664784
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||||||||||||||||| ||||  | ||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||| || |||||    
T  41664878 taacaaccgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaacccccaaccctccatactccttcctcatactcaaag 41664784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 32267184 - 32267277
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaa 143  Q
    ||||||||||||||||||||| ||||  | ||| ||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||| ||||    
T  32267184 taacaaccgccaacaccatttacccaacaaagctatgttaaactctctcaatctcgtaacccccaaccctccatactccttccgcaaactcaaa 32267277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 7925016 - 7925112
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  7925016 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 7925112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 8300433 - 8300527
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||    
T  8300433 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaag 8300527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 9923231 - 9923325
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||||||||||||||||  |||  | ||| |  |||||||||||||| ||| |||| |||||||||||||||||| ||||||||| |||||    
T  9923231 taacaaccgccaacaccatttatccaacaaagctaaattaaactctctcaacctcgtaacccccaaccctccatactccttcctcaaactcaaag 9923325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 172549 - 172464
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctca 135  Q
    |||||||| ||| |||||||| ||||  | ||||||||||||||| ||||| ||| |||  |||||||||||||||||| ||||||    
T  172549 taacaacctccagcaccatttacccaacaaagcaatgttaaactccctcaacctcttaaaccccaaccctccatactccttcctca 172464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 8902427 - 8902528
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    ||||||| ||||||| ||| | |||||| |||||| ||||||||||||||| || |  ||||| |  ||||| |||||||  |||||||| ||||| |||    
T  8902427 caccctataccacaagccagctctatcaactaacatccgccaacaccattttcctaagagagccagattaaattctctcatcctcctaacccccaaacct 8902526  T
Q  120 cc 121  Q
    ||    
T  8902527 cc 8902528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 10530332 - 10530401
Alignment:
Q  87 ttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||| || ||||||| || ||||||||||||| |  | | |||||||||| |||||||||    
T  10530332 ttaaactctctcaacctactaacactcatccctccatactccttttttatacacaaagaattccaaccaa 10530401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 24794413 - 24794454
Alignment:
Q  87 ttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  24794413 ttaaactccctcaatctcctaacccccaaccctccagactcc 24794454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 7e-57; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 14440344 - 14440480
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||||||||    
T  14440344 caccctacaccacaaaccacccctatcaactaacaaacgccaacaccatttcaccaacagagcaatgttaaactctctcaacctcctaacacccaaccct 14440443  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  14440444 ccatactccctcctcaaacacaaagaactccaaccaa 14440480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 33515747 - 33515621
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||| | |||||| |||||||||| |||||||||||||| || | |||||||||||||||||| |||||||||||||||| |||     
T  33515747 caccctacgccacaacccatctctatcaactaacaaccgtcaacaccatttccctagcaaagcaatgttaaactctcttaatctcctaacacccagcccc 33515648  T
Q  120 ccatactccctcctcaaacacaaagaa 146  Q
    |||||||||||||||||||||||||||    
T  33515647 ccatactccctcctcaaacacaaagaa 33515621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 12646121 - 12646257
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    ||||||| ||||||| ||| | |||||  ||||||||| |||||||||||| || |  | | ||| ||||||||||||||| ||||||||||||||||||    
T  12646121 caccctataccacaatccatctctatctactaacaacctccaacaccattttcctaacaaaacaaagttaaactctctcaacctcctaacacccaaccct 12646220  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12646221 ccatactccctcctcaaacacaaagaattccaaccaa 12646257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 28253349 - 28253428
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    ||||||| |||||||||||||| || |  || || |  |||||||||||||| ||||| |||||||||||||||||||||    
T  28253349 ctaacaaacgccaacaccattttcctaacagggctaaattaaactctctcaacctccttacacccaaccctccatactcc 28253428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 36804748 - 36804829
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccct 130  Q
    |||||| || |||||||||||| || |||| |||||| ||||||||| ||||  ||||||| ||||||| ||||| ||||||    
T  36804748 ctaacatcctccaacaccattttcctagtaaagcaatattaaactctttcaacttcctaacccccaaccatccatgctccct 36804829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 28400061 - 28399982
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| || |||||||||||| || |||| |||||| ||||||||  |||||| |||||| ||||| |||||| |||||    
T  28400061 ctaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatcgcctaacccccaaacctccaaactcc 28399982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 35488459 - 35488545
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| ||||||||| |||||||||||| || |||| |||||  ||||||||  ||||  ||||||| ||||| ||||||| ||||    
T  35488459 ctatcaactaacaacctccaacaccatttacctagtaaagcaacattaaactccttcaacttcctaacccccaaacctccatgctcc 35488545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 12565214 - 12565250
Alignment:
Q  87 ttaaactctctcaatctcctaacacccaaccctccat 123  Q
    |||||||||||||||||| | ||||||||||||||||    
T  12565214 ttaaactctctcaatctcttgacacccaaccctccat 12565250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 13550718 - 13550770
Alignment:
Q  21 accctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccc 73  Q
    |||||| |||||||| |||| |||||| | ||||||| |||||||||||||||    
T  13550718 accctataccacaaatcacctctatcaaccaacaacctccaacaccatttccc 13550770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 13551171 - 13551223
Alignment:
Q  21 accctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccc 73  Q
    |||||| |||||||| |||| |||||| | ||||||| |||||||||||||||    
T  13551171 accctataccacaaatcacctctatcaaccaacaacctccaacaccatttccc 13551223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 17605874 - 17605738
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| ||||||||| |||||| || |||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||||||    
T  17605874 caccctactccacaaacctcccctatcaactaacagccaccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccct 17605775  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  17605774 ccatactccctcctcaaacacaaagaactccaaccaa 17605738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 10576790 - 10576654
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| || |||||| ||||||||| |||||| ||||||||||||||||||||  | | ||||||||||||||||||| ||||||||||||||||||    
T  10576790 caccctactccgcaaacctcccctatcaactaacagccgccaacaccatttccccaacaaaacaatgttaaactctctcaacctcctaacacccaaccct 10576691  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  10576690 ccatactccctcctcaaacacaaagaactccaaccaa 10576654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 21629662 - 21629526
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| | ||||||| |||||| |||||||||| |||||||||  | ||||||||||||||||||||| ||||||||||||||||||    
T  21629662 caccctactccacaaacctcacctatcaactaacagccgccaacacaatttccccaacaaagcaatgttaaactctctcaacctcctaacacccaaccct 21629563  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  21629562 ccatactccctcctcaaacacaaagaactccaaccaa 21629526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 17577258 - 17577120
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcc--taacacccaacc 117  Q
    |||||||| ||||||||| ||||||||| |||||| || |||||||||||||||||  | ||||||||||||||||| ||| ||||  ||||||||||||    
T  17577258 caccctactccacaaacctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctataacacccaacc 17577159  T
Q  118 ctccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||| |||||||||||| |||| ||||||||||||||    
T  17577158 ctccatgctccctcctcaagcacacagaactccaaccaa 17577120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 20882561 - 20882456
Alignment:
Q  32 caaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctc 131  Q
    ||||||| ||||| || ||||||||||||||||||||||| |||  | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  20882561 caaaccatccctaacaactaacaaccgccaacaccatttctccaacaaagcaatgttaaactctctcaacctcctaacacccatccctccatactccctc 20882462  T
Q  132 ctcaaa 137  Q
    ||||||    
T  20882461 ctcaaa 20882456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 13938347 - 13938451
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaact 148  Q
    ||||||||| |||||||||||| |  |  | ||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||||| |    
T  13938347 ctaacaacctccaacaccattttcttaacaaagcaatgttaaactctctcaatctcctaacacccatccctccgtactccttcctcaaacataaagaatt 13938446  T
Q  149 ccaac 153  Q
    |||||    
T  13938447 ccaac 13938451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 2554236 - 2554330
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||| ||||||||||||| ||||  | ||||||||||||||||||||| ||| |||| | |||||||||||||||| |||||| || |||||    
T  2554236 taacaactgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaaccctcaaccctccatactccttcctcatactcaaag 2554330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 24766924 - 24766830
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||||||||||||||||| || |  | |||||  ||||||||||| || ||| |||| |||||||||||||||||| |||||| || |||||    
T  24766924 taacaaccgccaacaccatttacctaacaaagcaacattaaactctcttaacctcgtaacccccaaccctccatactccttcctcagactcaaag 24766830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 15956502 - 15956396
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaactc 149  Q
    ||||||||||||| ||||||| ||||  || ||||| ||||| |||||||| | |||||||  || ||||||||||||| |  | ||||||||||||  |    
T  15956502 taacaaccgccaaaaccattttcccaacagggcaatattaaagtctctcaaccacctaacaaacatccctccatactccttttttaaacacaaagaatcc 15956403  T
Q  150 caaccaa 156  Q
    |||||||    
T  15956402 caaccaa 15956396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 21549470 - 21549556
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| |||||| || |||||||||||| || |||| |||||| ||||||||  |||||||||| || ||||| ||||||| ||||    
T  21549470 ctatcaactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctcacccccaaacctccatgctcc 21549556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 503059 - 502998
Alignment:
Q  33 aaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactc 94  Q
    ||||||||||||||  |||||| || ||||||||||||||| ||||  ||||| ||||||||    
T  503059 aaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaatattaaactc 502998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 14372464 - 14372423
Alignment:
Q  87 ttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    ||||||||||| || || ||||||||||||||||||||||||    
T  14372464 ttaaactctcttaaccttctaacacccaaccctccatactcc 14372423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 26205949 - 26205993
Alignment:
Q  28 accacaaaccacccctatcatctaacaaccgccaacaccatttcc 72  Q
    ||||||||||||| |||||| | || |||||||||||||||||||    
T  26205949 accacaaaccacctctatcaaccaataaccgccaacaccatttcc 26205993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 33753672 - 33753616
Alignment:
Q  59 ccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaa 115  Q
    ||||||||||||  |||| |||||||||||||||| | |||||||||| || |||||    
T  33753672 ccaacaccatttagccagaagagcaatgttaaactttttcaatctccttacccccaa 33753616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 10780801 - 10780937
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||  | ||||||||||||||||||||| ||||| ||||||||||||    
T  10780801 caccctactccacaaacctcccctatcaactaacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccct 10780900  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  10780901 ccatactccctcctcaaacacaaagaactccaaccaa 10780937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 8299722 - 8299586
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| ||||||||| |||||| || |||||||||||||||||  | ||||||||||||||||| ||| ||||||||||||||||||    
T  8299722 caccctactccacaaacctcccctatcaactaacagcctccaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctaacacccaaccct 8299623  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  8299622 ccatactccctcctcaagcacacagaactccaaccaa 8299586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 25856979 - 25856843
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| ||||||||| |||||| || | |||||||||||||||  | ||||||||||||||||| ||| ||||||||||||||||||    
T  25856979 caccctactccacaaacctcccctatcaactaacagcctctaacaccatttccccaacaaagcaatgttaaactctcgcaacctcctaacacccaaccct 25856880  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||||||||||| |||| ||||||||| ||||    
T  25856879 ccatactccctcctcaagcacacagaactccacccaa 25856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 27796106 - 27796220
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacaca 141  Q
    |||||| ||||||||||||||||||||||||| || | ||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||||||||    
T  27796106 ctatcaactaacaaccgccaacaccatttccctagcaaagcaatgttaaacttgctcaatctccgaacacccaaccccccatactccctcctcaaacaca 27796205  T
Q  142 aagaactccaaccaa 156  Q
    |||||  ||||||||    
T  27796206 aagaatgccaaccaa 27796220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 27165485 - 27165370
Alignment:
Q  40 ccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaaca 139  Q
    |||||||  |||||||||||||||||||||||||||| |  ||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||    
T  27165485 ccctatctactaacaaccgccaacaccatttccccagcaatgcaatgttaaactttctcaacctcctaacacccatccctccatactccttcctcaaaca 27165386  T
Q  140 caaagaactccaacca 155  Q
     |||||| ||||||||    
T  27165385 taaagaattccaacca 27165370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 33170258 - 33170391
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||| | || ||  ||||||||| |||||||||||| || |  | |||||| |||||||| ||||| ||||||||||||| ||||    
T  33170258 caccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacacccatccct 33170357  T
Q  120 ccatactccctcctcaaacacaaagaactccaac 153  Q
    ||||||||| |||||||||| |||||| ||||||    
T  33170358 ccatactccttcctcaaacataaagaattccaac 33170391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 42928731 - 42928846
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||||||| ||| |  |||||||   |||||| ||||||||||| || ||||  | |||||| |||||||||||||| ||||||||||||| ||||    
T  42928731 caccctacaccataaagcttccctatctattaacaatcgccaacaccactttcccaacaaagcaatattaaactctctcaacctcctaacacccatccct 42928830  T
Q  120 ccatactccctcctca 135  Q
    ||||||||| ||||||    
T  42928831 ccatactccttcctca 42928846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 23239013 - 23239107
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||||| ||||||||||| ||||  | ||||||||| ||||| ||||||||| |||| |||||||||||||||||| ||| ||||| |||||    
T  23239013 taacaaccgtcaacaccatttacccaacaaagcaatgttgaactccctcaatctcgtaacccccaaccctccatactccttccgcaaactcaaag 23239107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 30731824 - 30731730
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||    
T  30731824 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaactcccaaccctccatactccttcctcatactcaaag 30731730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 27116683 - 27116598
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctca 135  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| ||||||    
T  27116683 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctca 27116598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 42514350 - 42514446
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| ||||||| |||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  42514350 taacaacctccaacacaatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 42514446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 28535185 - 28535092
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||||||||||||||||| ||||  | ||| |  |||||||||||||| ||| |||| |||||||||||||||| | ||||||||| |||||    
T  28535185 taacaaccgccaacaccatttacccaaca-agctaaattaaactctctcaacctcgtaacccccaaccctccatacttcttcctcaaactcaaag 28535092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 35983301 - 35983207
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||||||||||||||||  |||  | ||| |  ||||||||| |||| ||| |||| |||||||||||||||||| ||||||||| |||||    
T  35983301 taacaaccgccaacaccatttatccaacaaagctaaattaaactctttcaacctcgtaacccccaaccctccatactccttcctcaaactcaaag 35983207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 38358089 - 38358175
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| |||||| || |||||||||||| || |||| |||||| ||||||||  ||||||||||||| ||||| |||||| |||||    
T  38358089 ctatcaactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctaacccccaaacctccaaactcc 38358175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 35122217 - 35122138
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| || ||||||||||||||| ||||  ||||  |||||||  ||||| |||||||| |||||||||||| |||||    
T  35122217 ctaacatcctccaacaccatttccctagtaatgcaacattaaacttcctcaacctcctaacccccaaccctccagactcc 35122138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 22094782 - 22094716
Alignment:
Q  28 accacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactc 94  Q
    |||| ||||||||||||||  |||||| || ||||||||| ||||| |||| |||||| ||||||||    
T  22094782 accaaaaaccacccctatccactaacatcctccaacaccacttccctagtaaagcaatattaaactc 22094716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 1e-49; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 12341795 - 12341659
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||  | ||||||||||||||||||||| ||||| ||||||||||||    
T  12341795 caccctactccacaaacctcccctatcaactaacagccgccaacaccatttccccaacaaagcaatgttaaactctctcaacctcctcacacccaaccct 12341696  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  12341695 ccatactccctcctcaaacacaaagaactccaaccaa 12341659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 19891277 - 19891413
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||||||| |||||||| ||||||| |||||||||||||||| ||  |  |||| ||||||||||||||| ||||||||||||| ||||    
T  19891277 caccctacgccacaaaccaaccctatcaactaacaatcgccaacaccatttcctcaacaatgcaaagttaaactctctcaacctcctaacacccatccct 19891376  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||||||||||||    
T  19891377 ccatactccctcctcaaacacaaagaactccaaccaa 19891413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 48569579 - 48569453
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||| | |||||| ||||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||| ||||    
T  48569579 caccctacgccacaacccatctctatcaactaacaaccgccaacaccatttctctagcaaagcaatgttaaactctctcaatctcctaacacccagccct 48569480  T
Q  120 ccatactccctcctcaaacacaaagaa 146  Q
    |||||||||||||||||||||||||||    
T  48569479 ccatactccctcctcaaacacaaagaa 48569453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 34332325 - 34332231
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||||||||||||||||| ||||  | ||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||| || |||||    
T  34332325 taacaaccgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaacccccaaccctccatactccttcctcatactcaaag 34332231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 962703 - 962570
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||| | || ||  ||||||||| |||||||||||| || |  | |||||| |||||||| ||||| ||||||||||||| ||||    
T  962703 caccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacacccatccct 962604  T
Q  120 ccatactccctcctcaaacacaaagaactccaac 153  Q
    || |||||| |||||||||| |||||| ||||||    
T  962603 ccgtactccttcctcaaacataaagaattccaac 962570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 2364907 - 2365003
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  2364907 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 2365003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 3141451 - 3141568
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||| | || ||  ||||||||| |||||||||||| || |  | |||| |||||||||| ||||||||||||||||||| ||||    
T  3141451 caccctacgccacaacccatctctctctactaacaacctccaacaccattttcctaacaaagcagtgttaaactccctcaatctcctaacacccatccct 3141550  T
Q  120 ccatactccctcctcaaa 137  Q
    | ||||||| ||||||||    
T  3141551 ctatactccttcctcaaa 3141568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 19919739 - 19919645
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||| |||||||||||| ||||  |  |||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||    
T  19919739 taacaacctccaacaccatttgcccaacaaggcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatacccaaag 19919645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 20531591 - 20531457
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||| ||| |||||||||  ||||||||  |||||| ||||||||||||||||||| ||  ||  ||||||||  |||||| |||||||| ||||||||     
T  20531591 caccttacgccacaaaccttccctatcaattaacaaacgccaacaccatttccccaataatgcggtgttaaac--tctcaacctcctaacccccaaccca 20531494  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||| |||||| ||| | | || |||||||||    
T  20531493 ccatactccttcctcatacaaacaaaattccaaccaa 20531457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 16179576 - 16179680
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaact 148  Q
    ||||||||| |||||||||||||||||  | ||| |  |||||||| ||||| |||||||| ||||||||| |||||||| |||||| ||| | |||| |    
T  16179576 ctaacaacctccaacaccatttccccaacaaagcgacattaaactccctcaacctcctaactcccaacccttcatactccttcctcagacatagagaatt 16179675  T
Q  149 ccaac 153  Q
    |||||    
T  16179676 ccaac 16179680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 10323080 - 10322987
Alignment:
Q  51 aacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||| |||||||||||| ||||  | ||||||||||||||| ||||  ||| |||| |||||||||||| ||||| |||||| || |||||    
T  10323080 aacaacctccaacaccatttacccaacaaagcaatgttaaactccctcagcctcttaacccccaaccctccaaactccttcctcatactcaaag 10322987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 19652258 - 19652202
Alignment:
Q  59 ccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaa 115  Q
    ||||||||||||  |||| |||||||||||||||||| |||||||||| || |||||    
T  19652258 ccaacaccatttagccagaagagcaatgttaaactctttcaatctccttacccccaa 19652202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 43284850 - 43284791
Alignment:
Q  61 aacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctc 120  Q
    ||||||||||||| |  | |||||| ||||||||||||||||||||||| ||||| ||||    
T  43284850 aacaccatttccctaaaatagcaatattaaactctctcaatctcctaactcccaaacctc 43284791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 45684805 - 45684884
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| || |||||||||||| || |||| |||||| ||||||||  |||||| |||||| ||||| |||||| |||||    
T  45684805 ctaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatcgcctaacccccaaacctccaaactcc 45684884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 14863938 - 14863897
Alignment:
Q  87 ttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  14863938 ttaaactccctcaatctcctaacccccaaccctccagactcc 14863897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 144 - 280
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||| ||| |||||| ||| | |||||  ||||||||| ||||||||||||||| |  | ||||||||||||||||||||| ||||||||||||||||||    
T  144 caccttacgccacaatccatctctatctactaacaacctccaacaccatttccctaacaaagcaatgttaaactctctcaacctcctaacacccaaccct 243  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||||||||||||||||||||| |||||||||    
T  244 ccatactccctcctcaaacacaaagaattccaaccaa 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 48312694 - 48312830
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||  | |||||| ||||||||||| ||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||     
T  48312694 caccctacgccacaacccctctctatcaactaacaaccgctaacaccatttccctagcaaagcaatgttaaactctctcaatctccgaacacccaacccc 48312793  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    |||||||||||||||||||||||||||  ||||||||    
T  48312794 ccatactccctcctcaaacacaaagaatgccaaccaa 48312830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 55725246 - 55725110
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    ||||||| |||| || ||| | |||||  ||||||||| ||||||||||||||| |  | ||||| ||||||||||||||| ||||||||||||||||||    
T  55725246 caccctataccataatccatctctatctactaacaacctccaacaccatttccctaacaaagcaaagttaaactctctcaacctcctaacacccaaccct 55725147  T
Q  120 ccatactccctcctcaaacacaaagaactccaaccaa 156  Q
    ||||||||||||||||||||||||||| |||||||||    
T  55725146 ccatactccctcctcaaacacaaagaattccaaccaa 55725110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 54482677 - 54482573
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacaca 141  Q
    |||||| ||||||||||||||||||||||||| || | ||||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||    
T  54482677 ctatcaactaacaaccgccaacaccatttccctagcaaagcaatgttaaactcgctcaatctccgaacacccagccccccatactccctcctcaaacaca 54482578  T
Q  142 aagaa 146  Q
    |||||    
T  54482577 aagaa 54482573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 19755897 - 19755991
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||||||||||||||||  |||  | ||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||| || |||||    
T  19755897 taacaaccgccaacaccatttatccaacaaagcaatgttaaactctctcaaccttgtaacacccaaccctccatactccttcctcatactcaaag 19755991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 19783909 - 19783815
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||||||||||||||||  |||  | ||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||| || |||||    
T  19783909 taacaaccgccaacaccatttatccaacaaagcaatgttaaactctctcaaccttgtaacacccaaccctccatactccttcctcatactcaaag 19783815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 46146277 - 46146410
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||| ||| | || ||  |||||||||  ||||||||||| || |  | ||||||||||||| | ||||||||||||||||||| ||||    
T  46146277 caccctacgccacaacccatctctctctactaacaaccttcaacaccattttcctaacaaagcaatgttaaaccccctcaatctcctaacacccatccct 46146376  T
Q  120 ccatactccctcctcaaacacaaagaactccaac 153  Q
    || |||||| |||||||||| |||||| ||||||    
T  46146377 ccgtactccttcctcaaacataaagaattccaac 46146410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 23642101 - 23642005
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  23642101 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 23642005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 23647759 - 23647663
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| ||||||||||||  |||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  23647759 taacaacctccaacaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 23647663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 1828050 - 1827956
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||||||||||||||||  |||  | || |||||||||||||||||| ||| |||| ||||  |||||||||||| |||||| || |||||    
T  1828050 taacaaccgccaacaccatttatccaacaaagaaatgttaaactctctcaacctcgtaacccccagtcctccatactccttcctcatactcaaag 1827956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 15740850 - 15740944
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||||  |||||||||| ||||  | |||||||||||||||| |||| ||| | || |||||||||||||||||| |||||| || |||||    
T  15740850 taacaaccgtaaacaccatttacccaacaaagcaatgttaaactctgtcaacctcgttacccccaaccctccatactccttcctcatactcaaag 15740944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 19733491 - 19733402
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaaca 139  Q
    |||||||| |||||||||||| || |  | | || |||||||||| ||||||||||||||||||| |||| | |||||| ||||||||||    
T  19733491 taacaacctccaacaccattttcctaacaaaacagtgttaaactccctcaatctcctaacacccatcccttcgtactccttcctcaaaca 19733402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 26694557 - 26694634
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatact 126  Q
    |||||| || |||||||||||| || |||| |||||| ||||||||  |||||||||| || ||||| ||||||||||    
T  26694557 ctaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctcacccccaaacctccatact 26694634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 8935682 - 8935748
Alignment:
Q  28 accacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactc 94  Q
    |||| ||||||||||||||  |||||| || ||||||||||||||| ||||  ||||| ||||||||    
T  8935682 accaaaaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaatattaaactc 8935748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 19115052 - 19115110
Alignment:
Q  36 ccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactc 94  Q
    |||||||||||  ||||||||| ||||||||||||||| | || |||||| ||||||||    
T  19115052 ccacccctatccactaacaacctccaacaccatttccctaataaagcaatattaaactc 19115110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 42952978 - 42952937
Alignment:
Q  87 ttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  42952978 ttaaactccctcaatctcctaacccccaaccctccagactcc 42952937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 47419435 - 47419528
Alignment:
Q  51 aacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||| |||||||||||| || |  | ||||||||||||||| ||||  |||  ||| |||||||||||| ||||| |||||| || |||||    
T  47419435 aacaacctccaacaccatttacctaacaaagcaatgttaaactccctcagcctctgaacccccaaccctccaaactccttcctcatactcaaag 47419528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 3129528 - 3129476
Alignment:
Q  21 accctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccc 73  Q
    |||||| ||||||||||||| |||||  | |||| ||||||||||||||||||    
T  3129528 accctataccacaaaccacctctatccaccaacatccgccaacaccatttccc 3129476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 5789565 - 5789513
Alignment:
Q  87 ttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaaca 139  Q
    |||||||| ||||| |||||| | ||||||||| |||||||||||| ||||||    
T  5789565 ttaaactccctcaacctcctatctcccaacccttcatactccctccgcaaaca 5789513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 11586738 - 11586638
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||| |||||||||| ||  || ||||| |||||||||||||||||||||| || |  || ||| |  |||||||||| || ||||||||| ||| ||||    
T  11586738 caccttacaccacaacccttccttatcaactaacaaccgccaacaccattttcctaacagggcagtaataaactctcttaacctcctaacatccatccct 11586639  T
Q  120 c 120  Q
    |    
T  11586638 c 11586638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 31423202 - 31423305
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||||||||  | |||| |||||||||||||||| ||||||||||||| ||||    
T  31423202 caccctacgccacaaaccatccctatcaactaacaaccgccaacaccatttccccaacaaagcactgttaaactctctcaacctcctaacacccatccct 31423301  T
Q  120 ccat 123  Q
    ||||    
T  31423302 ccat 31423305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 11276758 - 11276664
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||||||||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| ||| ||||| |||||    
T  11276758 taacaaccgccaacaccatttacccaccaaagcaatgttaaactccctcaacctcgtaacccccaaccctccatactccttccgcaaactcaaag 11276664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 4937638 - 4937542
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  4937638 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 4937542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 17721265 - 17721359
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    ||||||||||||||||||||| ||||  | ||| |  |||||||||||||| ||| |||| |||||||||||||||||| ||||||||| |||||    
T  17721265 taacaaccgccaacaccatttacccaacaaagctaaattaaactctctcaacctcgtaacccccaaccctccatactccttcctcaaactcaaag 17721359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 29968604 - 29968682
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    ||||||||||||||||||||| ||||  | |||||| |||||||| ||||||||| |||| ||||||||||||||||||    
T  29968604 taacaaccgccaacaccatttacccaacaaagcaatattaaactccctcaatctcgtaacccccaaccctccatactcc 29968682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 39931136 - 39931017
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccct 119  Q
    |||||||||||||||| || | |  ||  ||||||| |||||||||||||| || |  |||||||| |||| ||| ||||| |||||||| |||||||||    
T  39931136 caccctacaccacaaatcatcaccctccactaacaaacgccaacaccatttacctaacagagcaatattaagctccctcaacctcctaacccccaaccct 39931037  T
Q  120 ccatactccctcctcaaaca 139  Q
    ||||||||| | ||||||||    
T  39931036 ccatactcctttctcaaaca 39931017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 234948 - 234854
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||| |||||||||||| ||||  | |||||| |||||||||| ||| ||| |||| |||||||||||||||||| |||||| || |||||    
T  234948 taacaaccaccaacaccatttacccaacaaagcaatattaaactctcgcaacctcgtaactcccaaccctccatactccttcctcatactcaaag 234854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 36364145 - 36364235
Alignment:
Q  49 ctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaaca 139  Q
    ||||||| |||||||||||||| | ||  | |||||| |||||||| |||||||||||||| |||||||| ||||||||| | ||||||||    
T  36364145 ctaacaaacgccaacaccatttactcaacaaagcaatattaaactccctcaatctcctaacccccaacccaccatactcctttctcaaaca 36364235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 18768030 - 18768116
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| |||||| || |||||||||||| || |||| |||||| ||||||||  ||||||||||||| ||||| |||||| |||||    
T  18768030 ctatcaactaacatcctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctaacccccaaacctccaaactcc 18768116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 37255358 - 37255413
Alignment:
Q  20 caccctacaccacaaaccacccctatcatctaacaaccgccaacaccatttcccca 75  Q
    |||||||| || ||||||| |||||||| |||||||||||||||| ||||||||||    
T  37255358 caccctacgccccaaaccatccctatcaactaacaaccgccaacatcatttcccca 37255413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 34457676 - 34457590
Alignment:
Q  42 ctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||| |||||| |  |||||||||||| || |||| |||||| ||||||||  ||||||||||||| ||||| ||||||| ||||    
T  34457676 ctatcaactaacatcacccaacaccatttacctagtaaagcaatattaaactccttcaatctcctaacccccaaacctccatgctcc 34457590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 3882 - 3970
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaac 138  Q
    ||||||||||||||||||||| ||||  | ||||||||||||||| ||||||||| ||||  ||||||||||||||||| ||| |||||    
T  3882 taacaaccgccaacaccatttacccaacaaagcaatgttaaactccctcaatctcgtaacctccaaccctccatactccttccgcaaac 3970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 105353 - 105257
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  105353 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 105257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 6051233 - 6051329
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaagaa 146  Q
    |||||||| |||||||||||| ||||  | |||||||||||||||  |||| ||| |||| |||||||||||||||||| |||||| || |||||||    
T  6051233 taacaacctccaacaccatttacccaacaaagcaatgttaaactccttcaacctcttaacccccaaccctccatactccttcctcatactcaaagaa 6051329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 35541664 - 35541758
Alignment:
Q  50 taacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactccctcctcaaacacaaag 144  Q
    |||||||| |||||||||||| ||||  | ||||||||||||||| ||||| ||| |||| |||||||||||||||| | |||||| || |||||    
T  35541664 taacaacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatacttcttcctcatactcaaag 35541758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 47622597 - 47622509
Alignment:
Q  40 ccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactctctcaatctcctaacacccaaccctccatactcc 128  Q
    |||||||| ||||||| || ||||| ||||| || |  || || || |||||||||| ||| ||||||||| |||||||||||||||||    
T  47622597 ccctatcaactaacaaacgtcaacatcattttcctaacagggctatattaaactctcccaacctcctaacagccaaccctccatactcc 47622509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 25504526 - 25504460
Alignment:
Q  28 accacaaaccacccctatcatctaacaaccgccaacaccatttccccagtagagcaatgttaaactc 94  Q
    |||| ||||||||||||||  |||||| || ||||||||||||||| ||||  ||||| ||||||||    
T  25504526 accaaaaaccacccctatccactaacatcctccaacaccatttccctagtaaggcaatattaaactc 25504460  T

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