View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13701_low_6 (Length: 392)
Name: NF13701_low_6
Description: NF13701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13701_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 206 - 392
Target Start/End: Original strand, 47425598 - 47425783
Alignment:
| Q |
206 |
tttgttttagcccagtaaaggccatggacccatggcttaaacaaattgcaagaacatcaagccaaaaatagaaaaacatcgtagggtggtgaatataaag |
305 |
Q |
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| T |
47425598 |
tttgttttagcccagtaaaggccatggacccatggcttaaacaa-ttgcaagaacatcaagccaaaaatagaaaaacatcgtagggtggtgaatataaag |
47425696 |
T |
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| Q |
306 |
cccctaaccaacccctcacattcaaagacatattacccctgcaatgtattaaatcactactccacaacaacaccaaacaaaaatcac |
392 |
Q |
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| T |
47425697 |
cccctaaccaacccctcacattcaaagacatattacccctgcaatgtattaaatcactactccacaacaacaccaaacaaaaatcac |
47425783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 47425361 - 47425541
Alignment:
| Q |
1 |
tgttttctgtatgctacgctgtatttagtaacattaaataagcagctgaacttaaatggtgccattagccataagcatatgtattaggttataggcatcg |
100 |
Q |
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| T |
47425361 |
tgttttctgtacgctacgctgtatttagtaacattaaataagcagctgaacttaaatggtgccattagccttaagcatatgtattaggttataggcatcg |
47425460 |
T |
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| Q |
101 |
attcatttcatgattatttgtacttctaaaacatttagaaccacatgaccaatagaattcaaatcatgtcatagaaaacac |
181 |
Q |
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| T |
47425461 |
attcatttcatgattatttgtactactaaaacatttagaaccacatgaccaatagaattcaaatcatgtcatagaaaacac |
47425541 |
T |
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