View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13701_low_9 (Length: 297)
Name: NF13701_low_9
Description: NF13701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13701_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 49 - 275
Target Start/End: Original strand, 11435100 - 11435329
Alignment:
| Q |
49 |
acaacaccaaaaatcagaagagaatggaagaaatttaacccctttaacgacccacttttcttcttcaatcacataaactcagctccctgatcttcatctc |
148 |
Q |
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| T |
11435100 |
acaacaccaaaaatcagaagagaatggaagaaatttaacctctttaacgacccatttttcttcttcaatcacataagctcagctccctcatcttcatctc |
11435199 |
T |
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| Q |
149 |
cccattatcgatctccctctttctacccaatcaatatctca---ttcttcttcttcttccctagtcatatattgtaaggctatatgccaccatgcctgta |
245 |
Q |
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||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11435200 |
cccattatcgatctccctctttctaccaagtcaatatctcattcttcttcttcttcttccctagtcatacattgtaaggctatatgccaccatgcctgta |
11435299 |
T |
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| Q |
246 |
acaagaaaaaagaaacaaacatctgatgac |
275 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11435300 |
acaagaaaaaagaaacaaacatctgatgac |
11435329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 49 - 275
Target Start/End: Original strand, 17885923 - 17886148
Alignment:
| Q |
49 |
acaacaccaaaaatcagaagagaatggaagaaatttaacccctttaacgacccacttttcttcttcaatcacataaactcagctccctgatcttcatctc |
148 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
17885923 |
acaacaccagaaatcagaagagaatggaagaaatttaacctctt-aacgacccacttttcttcttcaatcacataaacccagctccctcatcttcatctc |
17886021 |
T |
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| Q |
149 |
cccattatcgatctccctctttctacccaatcaatatctcattcttcttcttcttccctagtcatatattgtaaggctatatgccaccatgcctgtaaca |
248 |
Q |
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| T |
17886022 |
cccattatcgatctccctctttctacccagccaatatctcattcttcttcttcttccctagtcatacattgtaaggctatatgccaccatgcctgtaaca |
17886121 |
T |
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| Q |
249 |
agaaaaaagaaacaaacatctgatgac |
275 |
Q |
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| T |
17886122 |
agaaaaaagaaacaaacatctaatgac |
17886148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 31518488 - 31518440
Alignment:
| Q |
207 |
tagtcatatattgtaaggctatatgccaccatgcctgtaacaagaaaaa |
255 |
Q |
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|||||||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
31518488 |
tagtcatacactgtgaggctatatgccaccatgcctgtaacaagaaaaa |
31518440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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