View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13702_high_12 (Length: 271)
Name: NF13702_high_12
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_high_12 |
 | |
|
| [»] scaffold0719 (1 HSPs) |
| | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 5292065 - 5291828
Alignment:
| Q |
24 |
ccgcttgatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtaagagaga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5292065 |
ccgcttgatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtgagagaga |
5291966 |
T |
|
| Q |
124 |
ggacaaagaataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5291965 |
ggacaaagaataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgt |
5291866 |
T |
|
| Q |
224 |
ttcggttgcagtttcacctcttatactctatgcctttg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5291865 |
ttcggttgcagtttcacctcttatactctatgcttttg |
5291828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 5305039 - 5305270
Alignment:
| Q |
30 |
gatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtaagagagaggacaa |
129 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| |||||| | ||| ||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
5305039 |
gatcttgaagacataccttcccttgtttctgaagatgaagcagacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggacaa |
5305138 |
T |
|
| Q |
130 |
agaataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
5305139 |
agaataatacaaagagtttggttctttggtctatagtaagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttcggt |
5305238 |
T |
|
| Q |
230 |
tgcagtttcacctcttatactctatgcctttg |
261 |
Q |
| |
|
||| |||||||||||||||||||||| |||| |
|
|
| T |
5305239 |
tgccatttcacctcttatactctatgcttttg |
5305270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 30 - 261
Target Start/End: Complemental strand, 5284564 - 5284333
Alignment:
| Q |
30 |
gatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtaagagagaggacaa |
129 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| |||||| | ||||||||||| ||| |||||||||||||||||| ||||| | ||||| |
|
|
| T |
5284564 |
gatcttgaagacataccttcccttgtttctgaagatgaagcagacatggcttatcaaaaattcgttcgtgcttgggaatcacttgttagagacaagacaa |
5284465 |
T |
|
| Q |
130 |
agaataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| | |
|
|
| T |
5284464 |
agaataatacaaagagtttggttctttggtctataattagaactttcttaaaagaaaacatattaatagcattttatgcattaatcagaactatttctgc |
5284365 |
T |
|
| Q |
230 |
tgcagtttcacctcttatactctatgcctttg |
261 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||| |
|
|
| T |
5284364 |
tgtagtttcacctcttatactttatgcttttg |
5284333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 15124290 - 15124519
Alignment:
| Q |
32 |
tcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtaagagagaggacaaag |
131 |
Q |
| |
|
||||||||| || |||||| ||||||||||||||||||| ||||| | ||| ||||||||||| ||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
15124290 |
tcttgaagacattccttcccttgtttctgaagatgaagcaaacatggcttataaaaaatttgttcatgcttgggaatcacttgttagagagaggactaag |
15124389 |
T |
|
| Q |
132 |
aataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggttg |
231 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||||||||||||||| |||||| | | |||| |
|
|
| T |
15124390 |
aacaatacaaagagtttggttctttggtctatagttagatcatacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttg |
15124489 |
T |
|
| Q |
232 |
cagtttcacctcttatactctatgcctttg |
261 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |
|
|
| T |
15124490 |
tagtttcacctctaatactctatgcttttg |
15124519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 14951377 - 14951148
Alignment:
| Q |
32 |
tcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtaagagagaggacaaag |
131 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||| |||||| | ||||||||||||| | || |||||||| ||||||||||| ||||| ||| |
|
|
| T |
14951377 |
tcttgaagacattccttctcttgtttctgaagatgaagcagacatggcctatcaaaaatttgcgcaagcatgggaatcccttgtaagagaaaggactaag |
14951278 |
T |
|
| Q |
132 |
aataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggttg |
231 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||||||| |||||| | | |||| |
|
|
| T |
14951277 |
aacgatacgaagagtttggttctttggtctatagttagatcttacctaaaagaaaacatattaatagcattttatgcattaatcagaactatagctgttg |
14951178 |
T |
|
| Q |
232 |
cagtttcacctcttatactctatgcctttg |
261 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |
|
|
| T |
14951177 |
tagtttcacctctgatactctatgcttttg |
14951148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 5312251 - 5312482
Alignment:
| Q |
30 |
gatcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtaagagagaggacaa |
129 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||||||| |||||| | |||||||| |||| |||| ||||| || ||||||||||||| |||| |
|
|
| T |
5312251 |
gatcttgaagacataccttcccttgcttctgaagatgaagcagacatgacatatcaaaactttgcgcatgcatgggattcccttgtaagagagaagacag |
5312350 |
T |
|
| Q |
130 |
agaataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggt |
229 |
Q |
| |
|
| || ||| | | ||| ||||||||||||||| | ||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||| |||| || |
|
|
| T |
5312351 |
ataaaaattccaggagcttggttctttggtctgttattagaacttacttaaaagaaaacatagtaatagcattttatgcattaatcagaactatttctgt |
5312450 |
T |
|
| Q |
230 |
tgcagtttcacctcttatactctatgcctttg |
261 |
Q |
| |
|
|| |||||||||||| ||||||||||| |||| |
|
|
| T |
5312451 |
tgtagtttcacctctaatactctatgcttttg |
5312482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 261
Target Start/End: Complemental strand, 31528059 - 31527830
Alignment:
| Q |
32 |
tcttgaagatataccttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcacttgtaagagagaggacaaag |
131 |
Q |
| |
|
||||||||| |||||| || ||||||||||||||||||| ||| |||||||||| ||||| ||| ||||| || |||| ||| |||||| ||| |
|
|
| T |
31528059 |
tcttgaagacatacctacccttgtttctgaagatgaagcaaacactgcgtatcaaaattttgtgcatgaatgggagtctcttggaaggaagaggagtaag |
31527960 |
T |
|
| Q |
132 |
aataatacaaagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagcattttatgcattaataagaactgtttcggttg |
231 |
Q |
| |
|
|| | |||||| | ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||| || | |||||| |||| |||| |
|
|
| T |
31527959 |
aacagtacaaaaaatttggttctttggtctatagttaaaacttacttacaagaaaacatattaatagcattctatgcactactcagaactatttctgttg |
31527860 |
T |
|
| Q |
232 |
cagtttcacctcttatactctatgcctttg |
261 |
Q |
| |
|
||||| |||||| || |||||||| |||| |
|
|
| T |
31527859 |
tagttttacctctaattctctatgcttttg |
31527830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 21109345 - 21109216
Alignment:
| Q |
47 |
ttccgttgtttctgaagatgaagctgacatgtcgtatcaaaaatttgttaatgcttgggaatcactt-----gtaagagagaggacaaagaataata--c |
139 |
Q |
| |
|
|||| |||||| |||||||||||| ||| | | ||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||| | |
|
|
| T |
21109345 |
ttcccttgtttttgaagatgaagcaaacagggcttatcaaaaatttgttcttgcttgggaatcacttagcttgttagagagaggactaagaataatatac |
21109246 |
T |
|
| Q |
140 |
aaagagtttggttctttggtctatagttag |
169 |
Q |
| |
|
||||||||||||||||||| || ||||||| |
|
|
| T |
21109245 |
aaagagtttggttctttggactgtagttag |
21109216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 254
Target Start/End: Complemental strand, 21260255 - 21260087
Alignment:
| Q |
90 |
tttgttaatgcttgggaatcacttgtaagagagaggacaaagaataatacaaagagtttggttctttggtctatagttagaactttcttga----aagaa |
185 |
Q |
| |
|
|||||| |||||||||||| | || | | || |||||| || |||||| ||||||||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
21260255 |
tttgttcatgcttgggaattagtttttaaagggaggactaattataataaaaagagtttggttctttggtctatagttagaacttactaaaaattaagaa |
21260156 |
T |
|
| Q |
186 |
aacatattaatagcattttatgcattaataagaactgtttcggttgcagtttcacctcttatactctat |
254 |
Q |
| |
|
|||| ||||| || ||||||||||||| |||||| || |||| ||||| |||||| ||||||||| |
|
|
| T |
21260155 |
aacacattaaaagtattttatgcattacacagaactattgttgttgtagtttgacctctaatactctat |
21260087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 33722900 - 33722829
Alignment:
| Q |
100 |
cttgggaatcacttgtaagagagaggacaaagaataatacaaagagtttggttctttggtctatagttagaa |
171 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
33722900 |
cttgggaatcacttgttggagagaggaccaagaacaatacaaagagtttagttctttggactgtagttagaa |
33722829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 21264026 - 21263968
Alignment:
| Q |
186 |
aacatattaatagcattttatgcattaataagaactgtttcggttgcagtttcacctct |
244 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| |||| ||| |||||||||||| |
|
|
| T |
21264026 |
aacatattaatagcattttatgaattaatcagaactatttctattgtagtttcacctct |
21263968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 21177788 - 21177723
Alignment:
| Q |
191 |
attaatagcattttatgcattaataagaactgtttcggttgcagtttcacctcttatactctatgc |
256 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| | || ||| |||||||||||| ||||||||||| |
|
|
| T |
21177788 |
attaatggcattttatgcattaatcagaactatatctgttttagtttcacctctaatactctatgc |
21177723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 21109210 - 21109182
Alignment:
| Q |
186 |
aacatattaatagcattttatgcattaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21109210 |
aacatattaatagcattttatgcattaat |
21109182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 6021 - 5899
Alignment:
| Q |
85 |
aaaaatttgttaatgcttgggaatcacttgtaagagagaggacaaagaat---aataca----aagagtttggttctttggtctatagttagaactttct |
177 |
Q |
| |
|
||||||||||| | ||||||||||||||||| | | ||||||| | |||| |||||| |||||| |||||||||||||| ||||||||||| || |
|
|
| T |
6021 |
aaaaatttgttcaagcttgggaatcacttgttataaagaggactaggaattataatacagattaagagtatggttctttggtctctagttagaactaact |
5922 |
T |
|
| Q |
178 |
tgaaagaaaacatattaatagca |
200 |
Q |
| |
|
| |||||||||||| |||||||| |
|
|
| T |
5921 |
taaaagaaaacataataatagca |
5899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 20031 - 19972
Alignment:
| Q |
141 |
aagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagca |
200 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | || |||||||||||| |||||||| |
|
|
| T |
20031 |
aagagtatggttctttggtctgtagttagaactattttaaaagaaaacataataatagca |
19972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 61268 - 61327
Alignment:
| Q |
141 |
aagagtttggttctttggtctatagttagaactttcttgaaagaaaacatattaatagca |
200 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
61268 |
aagagtatggttctttggtttgtagttagaactaacttaaaagaaaacataataatagca |
61327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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