View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_high_16 (Length: 245)
Name: NF13702_high_16
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 25526743 - 25526537
Alignment:
| Q |
24 |
tacatgttaaataacaaaatggccgaggctgagttgattaagaatggtccaacttggatcgaactttgaaataagaagaatgatgaatcaaagggattct |
123 |
Q |
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| T |
25526743 |
tacatgttaaataacaaaatggccgaggctgagttgattaagaatggtccaactcggatcgaactttgaaataagaagaatgatgaatcaaagggattct |
25526644 |
T |
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| Q |
124 |
gaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacat |
223 |
Q |
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| T |
25526643 |
gaatccaatcccaaaaggaaagcactacatcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacat |
25526544 |
T |
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| Q |
224 |
caatatt |
230 |
Q |
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||||||| |
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| T |
25526543 |
caatatt |
25526537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 25534719 - 25534541
Alignment:
| Q |
57 |
ttgattaagaatggtccaacttggatcgaactttgaaataagaaga------atgatgaatcaaagggattctgaatccaatcccaaaaggaaagcacta |
150 |
Q |
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||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25534719 |
ttgattaagaatggtccaactcaggtcgaactttgaaaaaagaagaggaagaatgatgaatcaaagg-attctgaatccaatcccaaaaggaaagcacta |
25534621 |
T |
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| Q |
151 |
catcctaacatttaacagtaggacattttacataaactaagctacaccctaagcatattttgtctttgtacatcaatatt |
230 |
Q |
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| T |
25534620 |
catcctaacatttaacagtaggacattttacataaactgagctacaccctaagcatattttgtctttgtacatcaatatt |
25534541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 25515738 - 25515864
Alignment:
| Q |
57 |
ttgattaagaatggtccaacttggatcgaactttgaaa----taagaagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactaca |
152 |
Q |
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|||||||||||||||| |||| ||||| ||||||||| |||||| || ||||||||| || |||||||||||||||||||||||||||||| | || |
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| T |
25515738 |
ttgattaagaatggtcaaactcggatcacactttgaaaaaaataagaacaaagatgaatcatagtgattctgaatccaatcccaaaaggaaagcagtgca |
25515837 |
T |
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| Q |
153 |
tcctaacatttaacagtaggacatttt |
179 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
25515838 |
tcctaacatttaacagtatgacatttt |
25515864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 179
Target Start/End: Complemental strand, 25541120 - 25541089
Alignment:
| Q |
148 |
ctacatcctaacatttaacagtaggacatttt |
179 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25541120 |
ctacatcctaacatttaacagtaggacatttt |
25541089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 7946712 - 7946623
Alignment:
| Q |
99 |
aagaatgatgaatcaaagggattctgaatccaatcccaaaaggaaagcactacatcct-aacatttaacagtaggacattttacataaac |
187 |
Q |
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||||| |||||||||||||||| |||| |||||||| ||||| ||| ||||| ||||| ||||||||| |||||||||||||||| |||| |
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| T |
7946712 |
aagaaagatgaatcaaagggatcctgattccaatccaaaaagaaaatcactaaatcctaaacatttaatagtaggacattttacacaaac |
7946623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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