View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13702_high_20 (Length: 226)

Name: NF13702_high_20
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13702_high_20
NF13702_high_20
[»] chr7 (13 HSPs)
chr7 (7-226)||(4698287-4698506)
chr7 (9-218)||(4862691-4862900)
chr7 (29-226)||(4784932-4785129)
chr7 (29-226)||(4817361-4817558)
chr7 (7-226)||(4713163-4713382)
chr7 (26-218)||(4629728-4629920)
chr7 (26-218)||(4652339-4652531)
chr7 (26-218)||(4665754-4665946)
chr7 (26-151)||(4635676-4635801)
chr7 (70-169)||(4854590-4854689)
chr7 (26-218)||(4660620-4660812)
chr7 (26-148)||(4642523-4642645)
chr7 (26-148)||(4671459-4671581)
[»] chr4 (1 HSPs)
chr4 (27-218)||(18926844-18927035)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 4698506 - 4698287
Alignment:
Q  7 ccaccatctcctcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtct 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698506 ccaccatctcttcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtct 4698407  T
Q  107 cgcacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgaga 206  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698406 cgcacacaatacctcaagaagcacaacaccaaaagagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgaga 4698307  T
Q  207 ctacccttcaccttagtgct 226  Q
    ||||||||||||||||||||    
T  4698306 ctacccttcaccttagtgct 4698287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 4862691 - 4862900
Alignment:
Q  9 accatctcctcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcg 108  Q
    |||||||| || || || |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  4862691 accatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttcttttcagaagaacgaaccaatggtggtctcg 4862790  T
Q  109 cacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagact 208  Q
    ||||||| ||||||||||| ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || |||||    
T  4862791 cacacaacacctcaagaaggacaacaccgaaagaatacacgtcggattttagagtcaacctttgacgaaggtagtattctggatctaaatatccaagact 4862890  T
Q  209 acccttcacc 218  Q
    ||||||||||    
T  4862891 acccttcacc 4862900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 4785129 - 4784932
Alignment:
Q  29 accttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagc 128  Q
    |||||||||||||||| |||| |||||||   | ||||| ||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||    
T  4785129 accttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaacgaaccaacgggggtctcgcacacaacacctcaagaagc 4785030  T
Q  129 acaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgct 226  Q
    ||||||||||| |||||||| || |||||||| ||||||||||| || | ||||||||| ||||| ||||||||||||||||| |||||| |||||||    
T  4785029 acaacaccgaaagagtacacatcagactttagagtcaacctttgtcgcatgtagtattctggatccaaatacccgagactacctttcaccatagtgct 4784932  T

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Target: chr7; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 4817558 - 4817361
Alignment:
Q  29 accttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagc 128  Q
    |||||||||||||||| |||| |||||||   | ||||| ||||||||||| |||||||| |||||||| || |||||||||||||| ||||||||||||    
T  4817558 accttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttcttatccaaagaccgaaccaacgggggtctcgcacacaacacctcaagaagc 4817459  T
Q  129 acaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcaccttagtgct 226  Q
    ||||||||||| |||||||| || |||||||| ||||| ||||| || | ||||||||| ||||| ||||||||||||||||| |||||| |||||||    
T  4817458 acaacaccgaaagagtacacatcagactttagagtcaatctttgtcgcatgtagtattctggatccaaatacccgagactacctttcaccatagtgct 4817361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 4713382 - 4713163
Alignment:
Q  7 ccaccatctcctcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtct 106  Q
    |||||||||| || |  ||||||||||||||||||||| ||| |||| ||   || |   || |||||| ||| ||||||||| || |||||||||||||    
T  4713382 ccaccatctcttcaactatcacaccttcattgtaacattttttgaacaaagcaaccatgttcactttttccttatccaaagaatgatccaaaggtggtct 4713283  T
Q  107 cgcacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgaga 206  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| || |||||| | |  || |||||| | || ||||| ||||| || | |    
T  4713282 cgcacacaacacctcaagaagcacaactccgaatgagtacacgtcagacttaagagtcaacttgtttcgtaggtagcactctggatccaaatatcctata 4713183  T
Q  207 ctacccttcaccttagtgct 226  Q
    |||||||||||| |||||||    
T  4713182 ctacccttcaccatagtgct 4713163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 4629728 - 4629920
Alignment:
Q  26 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 125  Q
    |||||||||||| |  ||| |||| |||||| | |||| ||| ||| | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
T  4629728 cacaccttcattatggcatttttgaaaccaacaaactagactagctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4629827  T
Q  126 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcacc 218  Q
    ||||| ||||| || ||||||||||| || ||||| || | ||||||  | |  |||||||||||||| ||||| || || || |||||||||    
T  4629828 agcaccacaccaaacgagtacacgtcagattttagagttagcctttggagcatatagtattcgggatccaaatatccaaggctccccttcacc 4629920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 4652339 - 4652531
Alignment:
Q  26 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 125  Q
    ||||||||||| ||| ||| |||  |||||| | |||| ||| ||| | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
T  4652339 cacaccttcatcgtagcattttttaaaccaacaaactagacttgctgtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4652438  T
Q  126 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcacc 218  Q
    ||||| |||||||| |||||||| || || ||||| || | ||||||  | |  || ||||| ||||| |||||||| || ||||||||||||    
T  4652439 agcaccacaccgaatgagtacacatcagattttagagttagcctttggagcatataatattctggatccaaataccctaggctacccttcacc 4652531  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 4665754 - 4665946
Alignment:
Q  26 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 125  Q
    ||||||||||| ||||||| |||  |||||| | |||| ||| ||  | ||||| ||||||  |||||||||||||||||| |||||||| |||||||||    
T  4665754 cacaccttcatcgtaacattttttaaaccaacaaactagactagcagtattcttatccaaatcacgaaccaaaggtggtctagcacacaacacctcaaga 4665853  T
Q  126 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcacc 218  Q
    ||||| |||||||| |||||||| || || ||||| || | ||||||  | |  || ||||||||||| ||||| ||||| || |||||||||    
T  4665854 agcaccacaccgaacgagtacacatcagattttagagttagcctttggagcatataatattcgggatccaaatatccgaggctccccttcacc 4665946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 4635676 - 4635801
Alignment:
Q  26 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 125  Q
    ||||||||| | ||| ||||||| ||||||| | |||| ||| ||| | ||||| ||||||   |||||||||||||| || |||||||| |||||||||    
T  4635676 cacaccttcttcgtagcatcttttgaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacctcaaga 4635775  T
Q  126 agcacaacaccgaaggagtacacgtc 151  Q
    ||||| |||||||| |||||||||||    
T  4635776 agcaccacaccgaatgagtacacgtc 4635801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 4854689 - 4854590
Alignment:
Q  70 cttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaagcacaacaccgaaggagtacacgtcggactttagggtcaacct 169  Q
    |||||||||| |||||  || || |||||||||||||||||||||| | ||||||||| ||| ||||||| |||||||| || |||||||| ||||||||    
T  4854689 cttttttcttatccaataaatgatccaaaggtggtctcgcacacaacatctcaagaagtacatcaccgaaagagtacacatcagactttagagtcaacct 4854590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 4660620 - 4660812
Alignment:
Q  26 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 125  Q
    |||||||||||  || |||||||  |||||| | |||| ||| | | | ||||| ||||||   |||||||| ||||| || |||||||| |||||||||    
T  4660620 cacaccttcatcatagcatcttttaaaccaacaaactagactagttgtattcttatccaaatcgcgaaccaatggtggcctagcacacaacacctcaaga 4660719  T
Q  126 agcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcacc 218  Q
    ||||| |||||||| |||||||| || || ||||| || ||||||||  | |  ||||||| |||||| |||||||| || || |||||||||    
T  4660720 agcaccacaccgaacgagtacacttcagattttagagttaacctttggagcatatagtattggggatccaaatacccaaggctccccttcacc 4660812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 4642523 - 4642645
Alignment:
Q  26 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 125  Q
    ||||||||| | ||| ||||||| ||||||| | |||| ||| ||  | ||||| ||||||  ||||||||||||||| || |||||||| || ||||||    
T  4642523 cacaccttcttcgtagcatcttttgaaccaacaaactagactagcagtattcttatccaaattacgaaccaaaggtggcctagcacacaacacttcaaga 4642622  T
Q  126 agcacaacaccgaaggagtacac 148  Q
    || || |||||||| ||||||||    
T  4642623 agtaccacaccgaacgagtacac 4642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 4671459 - 4671581
Alignment:
Q  26 cacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaaga 125  Q
    ||||||||||| ||| |||||||  |||||| | |||| ||| ||| | ||||| ||||||   |||||||||||||| || |||||||| || ||||||    
T  4671459 cacaccttcatcgtagcatcttttaaaccaacaaactagactagctgtattcttatccaaatcgcgaaccaaaggtggcctagcacacaacacttcaaga 4671558  T
Q  126 agcacaacaccgaaggagtacac 148  Q
    || || |||||||| ||||||||    
T  4671559 agtaccacaccgaatgagtacac 4671581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 18927035 - 18926844
Alignment:
Q  27 acaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttcttttccaaagaacgaaccaaaggtggtctcgcacacaatacctcaagaa 126  Q
    |||||||||| |||||||||||| |||||| | |||| ||| ||  | ||||| || |||   |||||||||||||| || |||||||||||||||||||    
T  18927035 acaccttcatcgtaacatctttgaaaccaacaaactagactagccgtcttcttatctaaatcgcgaaccaaaggtggccttgcacacaatacctcaagaa 18926936  T
Q  127 gcacaacaccgaaggagtacacgtcggactttagggtcaacctttgacgaaggtagtattcgggatctaaatacccgagactacccttcacc 218  Q
    |||| |||||||| ||||||||||| || |||||||| | ||||||  | |  ||||| || |||||||||||||| ||||| |||||||||    
T  18926935 gcaccacaccgaatgagtacacgtcagattttagggtaagcctttggagcatatagtactcaggatctaaatacccaagactccccttcacc 18926844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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