View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_high_3 (Length: 507)
Name: NF13702_high_3
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_high_3 |
 | |
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| [»] scaffold0043 (1 HSPs) |
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| [»] scaffold0555 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 9700869 - 9700410
Alignment:
| Q |
1 |
tttgtatctatgatctagacgagtagataagttgattcaatatctattannnnnnnngaaaaatgttgcctagacgataaggagttttcgtctttttaaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9700869 |
tttgtatcgatgatctagacgagtagataagttgattcgatacctattatttttttcgaaaaatgttgcctagacgataaggagttttcgtctttttaaa |
9700770 |
T |
|
| Q |
101 |
atgttaaaactattgaaatgagttgattcaatatatatctttgaacattgtaggggcatttacataatttacaaaagttaaaatattgaaatgagttgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9700769 |
atgttaaaactattgaaatgagttgattcaatatgtatttttgaatattgtaggggcatttacataatttacaaaagttaaaatattgaaatgagttgac |
9700670 |
T |
|
| Q |
201 |
caataaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaatagagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9700669 |
caatgaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaatagagt |
9700570 |
T |
|
| Q |
301 |
ttgagctggtgtttcacgattatttttggactttttggttatggtacacttcatcgtcacgtaagtatttggcacgcgtcattatgcgcttggtgcacac |
400 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9700569 |
ttgagatgttgtttcacgattttttttggactttttggttatggtacacttcatcgtcacgtaagcatttggcacgcgtcattatgcgcttggtgcacac |
9700470 |
T |
|
| Q |
401 |
caacacatgttgaacatgtgcatgcgcatgccctcactcgatcaactccaatctatgctc |
460 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
9700469 |
caacacatgttgaacacgtgcatgcacacgccctcactcgatcaactccaatctatgctc |
9700410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 13567108 - 13566649
Alignment:
| Q |
1 |
tttgtatctatgatctagacgagtagataagttgattcaatatctattannnnnnnngaaaaatgttgcctagacgataaggagttttcgtctttttaaa |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13567108 |
tttgtatcgatgatctagacgagtagataagttgattcgatacctattatttttttcgaaaaatgttgcctagacgataaggagttttcgtctttttaaa |
13567009 |
T |
|
| Q |
101 |
atgttaaaactattgaaatgagttgattcaatatatatctttgaacattgtaggggcatttacataatttacaaaagttaaaatattgaaatgagttgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13567008 |
atgttaaaactattgaaatgagttgattcaatatgtatttttgaatattgtaggggcatttacataatttacaaaagttaaaatattgaaatgagttgac |
13566909 |
T |
|
| Q |
201 |
caataaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaatagagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13566908 |
caatgaatttgcctcgtccatatgttcaaaatggccttatggttcgcaatgtttctgacgacaaatgaatttattgtcaaattctaaaaataaatagagt |
13566809 |
T |
|
| Q |
301 |
ttgagctggtgtttcacgattatttttggactttttggttatggtacacttcatcgtcacgtaagtatttggcacgcgtcattatgcgcttggtgcacac |
400 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13566808 |
ttgagatgttgtttcacgattttttttggactttttggttatggtacacttcatcgtcacgtaagcatttggcacgcgtcattatgcgcttggtgcacac |
13566709 |
T |
|
| Q |
401 |
caacacatgttgaacatgtgcatgcgcatgccctcactcgatcaactccaatctatgctc |
460 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
13566708 |
caacacatgttgaacacgtgcatgcacacgccctcactcgatcaactccaatctatgctc |
13566649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 34543 - 34580
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
34543 |
tctgacaggtggctttgggagtccaacactgatgatgt |
34580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 14844071 - 14844108
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
14844071 |
tctgacaggtggctttgggagtccaacactgatgatgt |
14844108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 499
Target Start/End: Complemental strand, 476419 - 476382
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
476419 |
tctgacaggtggctttgggagtccaacactgatgatgt |
476382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 3545035 - 3545072
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
3545035 |
tctgacaggtggctttgggagtccaacactgatgatgt |
3545072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 462 - 499
Target Start/End: Complemental strand, 31675136 - 31675099
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
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|
| T |
31675136 |
tctgacaggtggctttgggagtccaacaatgatgatgt |
31675099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 31921284 - 31921321
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31921284 |
tctgacaggtggctttgggagtccaacaatgatgatgt |
31921321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 499
Target Start/End: Complemental strand, 7874 - 7837
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |
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|
| T |
7874 |
tctgacaggtggctttgggagtccaacaataatgatgt |
7837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 499
Target Start/End: Complemental strand, 3939421 - 3939384
Alignment:
| Q |
462 |
tctgacaggtggctttgggagtccaacactgatgatgt |
499 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
3939421 |
tctgacaggtggctttgggattccaacaatgatgatgt |
3939384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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