View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_high_6 (Length: 324)
Name: NF13702_high_6
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 14742124 - 14741835
Alignment:
| Q |
1 |
aagaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgac |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14742124 |
aagaagaagaaggagaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgac |
14742025 |
T |
|
| Q |
101 |
cctattggttggaaagatgttggaaaaagtgtagtaagttggatacgtgagagtatgaaatctatggcttttgagattgcttctgctgagttacttgaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14742024 |
cctattggttggaaagatgttggaaaaagtgtagtaagttggatacgtgagagtatgaaatctatggcatttgagattgcttctgctgagttacttgaag |
14741925 |
T |
|
| Q |
201 |
atttggagttttctgaggtgaaacaaagaatgggacctggtcttacgtttgttattcaagcacaaccttagttgaatgctgttcctatgc |
290 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14741924 |
atttggagttttctgaaatgaaacaaagaatgggacctggtcttacgtttgttattcaagcacaaccttatttgaatgctgttcctatgc |
14741835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 50427801 - 50427902
Alignment:
| Q |
6 |
gaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctat |
105 |
Q |
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||||||| || |||||||| |||||| |||||||||||||||||||||||| |||||||||||||||| |||| || ||||||||||| ||||||||||| |
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| T |
50427801 |
gaagaagaaggagaaaaaatgatgcaacaatagaaattcaactaccctttgggaatatgaacaagaatgttcatgtccatgagaatattggtgaccctat |
50427900 |
T |
|
| Q |
106 |
tg |
107 |
Q |
| |
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|| |
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|
| T |
50427901 |
tg |
50427902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 9923784 - 9923678
Alignment:
| Q |
1 |
aagaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgac |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||| |
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| T |
9923784 |
aagaagaagaaggagaagaaataaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgac |
9923685 |
T |
|
| Q |
101 |
cctattg |
107 |
Q |
| |
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||||||| |
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|
| T |
9923684 |
cctattg |
9923678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1970175 - 1970069
Alignment:
| Q |
1 |
aagaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgac |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||| || ||| ||||||| |||||| |
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|
| T |
1970175 |
aagaagaagaaggagaagaaatgaaaatgcagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgtccataagaatattggtgac |
1970076 |
T |
|
| Q |
101 |
cctattg |
107 |
Q |
| |
|
||||||| |
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|
| T |
1970075 |
cctattg |
1970069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 43768412 - 43768518
Alignment:
| Q |
1 |
aagaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgac |
100 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||| |
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| T |
43768412 |
aagaagaagaaggagaagaaataaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgac |
43768511 |
T |
|
| Q |
101 |
cctattg |
107 |
Q |
| |
|
||||||| |
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|
| T |
43768512 |
cctattg |
43768518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 39655707 - 39655607
Alignment:
| Q |
7 |
aagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccctatt |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| || ||||||||||| |||||||||||| |
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| T |
39655707 |
aagaaggagaagaaaaaatgatgcagcaatagaaattcaactaccctttgagaatatgaataagaatgttcatgtccatgagaatattggtgaccctatt |
39655608 |
T |
|
| Q |
107 |
g |
107 |
Q |
| |
|
| |
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|
| T |
39655607 |
g |
39655607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 23424868 - 23424762
Alignment:
| Q |
1 |
aagaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgac |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||| |
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|
| T |
23424868 |
aagaagaagaaggagaagaaatgaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgac |
23424769 |
T |
|
| Q |
101 |
cctattg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
23424768 |
cctattg |
23424762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39429614 - 39429706
Alignment:
| Q |
1 |
aagaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatat |
93 |
Q |
| |
|
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |
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|
| T |
39429614 |
aagaagaagaaggagatgaaataaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatat |
39429706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 20991673 - 20991776
Alignment:
| Q |
4 |
aagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatataggtgaccct |
103 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||| |
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|
| T |
20991673 |
aagaagaaggagaagaaatgaaaatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatgttcatgtccatgagaatattggtgaccct |
20991772 |
T |
|
| Q |
104 |
attg |
107 |
Q |
| |
|
|||| |
|
|
| T |
20991773 |
attg |
20991776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 7054472 - 7054542
Alignment:
| Q |
3 |
gaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaat |
73 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7054472 |
gaagaagaaggagaagaaaaaatgatgcagcaatagaaattcaactaccctttaagaatatgaacaagaat |
7054542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 42345783 - 42345875
Alignment:
| Q |
1 |
aagaagaagaaggagaagaaaaaacgatgcagcaatagaaattcaactaccctttgagaatatgaacaagaatcttcacgtgcatgagaatat |
93 |
Q |
| |
|
|||||||||||||||| |||| || || |||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||| |
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|
| T |
42345783 |
aagaagaagaaggagatgaaataaaaattcagcaatagaaattcaactatcctttgagaatatgaacaagaatgttcatgtccatgagaatat |
42345875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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