View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_high_9 (Length: 289)
Name: NF13702_high_9
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 271
Target Start/End: Original strand, 9232098 - 9232345
Alignment:
| Q |
24 |
tgttctcggggaaatactatgtacaacacattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttat |
123 |
Q |
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| T |
9232098 |
tgttctccgggaaatactatgtacaacacattgattacaagggatttaaaattcgattaagtgacgcgggtgcagtggaagatgctaattgctcttttat |
9232197 |
T |
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| Q |
124 |
cccacggtactttttatacgatcgaagttttaataatgttctttttggcgaagacaattttggatctgaaccgttcattctggatccaataaatccattg |
223 |
Q |
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| T |
9232198 |
cccacggtactttttatatgatcaaagttttaataatgttctttttggagaagacaattttggatctgaaccgttcattctggatccaataaatccattg |
9232297 |
T |
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| Q |
224 |
agaatagcgtatttcaattgttcaagtccaataaaagatccacggtac |
271 |
Q |
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| T |
9232298 |
agaatagcgtatttcaattgttcaagtccaataaaagatccacggtac |
9232345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 9386547 - 9386430
Alignment:
| Q |
24 |
tgttctcggggaaatactatgtacaacacattgattacaagagatttaaaatttcgttaagtgacgcgggtgcagtggaagacactaattgctcttttat |
123 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| || |
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| T |
9386547 |
tgttctccgggaaatactatgtacaacacatagattacaagaggtttataattcgattaagtgacgcgggtgcagtggaagatgctaattgctctttcat |
9386448 |
T |
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| Q |
124 |
cccacggtactttttata |
141 |
Q |
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||| |||||||||||||| |
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| T |
9386447 |
cccgcggtactttttata |
9386430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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