View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_low_1 (Length: 656)
Name: NF13702_low_1
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 230 - 656
Target Start/End: Original strand, 38731001 - 38731449
Alignment:
| Q |
230 |
ataaataaatcatatcatatatattagtttataccgtcacggcaaggagaacatgttaccttttaattccatttaacacaaagtattagagaaatnnnnn |
329 |
Q |
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| T |
38731001 |
ataaataaatcatatcatacatattagtttataccgtcacggcaaggagaacatgttaccttttaattccatttaacacgaagtattagagaaatagaaa |
38731100 |
T |
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| Q |
330 |
nnntatgctggtgtgtcgggtgagaataaacttcactccaaaccactagacataaagaaagagagaaattccttttagtatatgctatcaatcaacacat |
429 |
Q |
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| T |
38731101 |
aaatatgctggtgtgtcgggtgagaataaacttcactccaagccactagacataaagaaagagagaaattccttttagtatatgctatcaatcaacacat |
38731200 |
T |
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| Q |
430 |
gctaatttgagaaatgtatgggataaaagttgagacacatgattcaccgttgtattgtagattatac-----------atacactcgattagaaaacata |
518 |
Q |
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| T |
38731201 |
gctaatttgagaaatgtatgggataaaagttgagacacaagattcaccgttgaattgtagattatacatactcaaaagatacactcgattagaaaacata |
38731300 |
T |
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| Q |
519 |
tataaattgatattatacacctccatgcgtatataatgcttaatttattgtgtatacacaataagt-----------aagagttacaaatttaaatccga |
607 |
Q |
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| T |
38731301 |
tataaattgatattatacacctccatgcgtatataatgcttaatttattgtgtatacgcaataagtgttgagaaatgaagagttacaaatttaaatccga |
38731400 |
T |
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| Q |
608 |
cctcaatgtatcaaatgtttttgcaatattttaccatataaactatgtt |
656 |
Q |
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| T |
38731401 |
actcaatgtatcaaatgtttttgtaatattttaccatataaactatgtt |
38731449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 38730819 - 38731017
Alignment:
| Q |
18 |
ataatatagtccaaactcattacgaaccaattttatagttagtttttgactaattctatctaaataagagatggatcttgcttcattttctcattgctta |
117 |
Q |
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| T |
38730819 |
ataatatagtccaaactcattacgaaccaattttatagttagtttttgactaattctatctaaataagagatggatcttgcttcattttcttattgctta |
38730918 |
T |
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| Q |
118 |
tttcaccaaatcagtaaattttatttactactaatatatatagtagtatatgtttgagatgatcagtatactggtaccggtgataaataaatcatatca |
216 |
Q |
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| T |
38730919 |
tttcaccaaatcagtaaattttatttactactaatatatatagtagtatatgtttgagatgatcagtatactggtaccggtgataaataaatcatatca |
38731017 |
T |
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