View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_low_13 (Length: 306)
Name: NF13702_low_13
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_low_13 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 41901719 - 41901421
Alignment:
| Q |
8 |
atacttgaatgaattttaattaatgactattaattagtcgtaaatttggtgcagcttttaagaggccatttagcgaagaatttatgaaattctgcctgga |
107 |
Q |
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| T |
41901719 |
atacttgaatgaattttaattaatgactattaattagtcggaaatttggtgcagtttttaagaggccatttagcgaagaatttattaaattctgcttgga |
41901620 |
T |
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| Q |
108 |
aagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaattac |
207 |
Q |
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| T |
41901619 |
aagatttgaagtgggactctggtcttctgcaatggagtcagtaacgctgatcttctatttcatttcttcccttttttcctctttaaatttgattaattac |
41901520 |
T |
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| Q |
208 |
ttgatcttaaactgtatcctttttattgtaattgataattaggcataatattgatgatgctttagcctgtgccattggagaattgaaaaacaagctact |
306 |
Q |
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| T |
41901519 |
ttgatcttaaactgtatcctttttattgtaattaataattaggcataatattgatgatgctttagcctgtgccatcggagaattgaaaaacaagctact |
41901421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 41896627 - 41896542
Alignment:
| Q |
67 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaac |
152 |
Q |
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| T |
41896627 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagtgggggtttggtcttctgcaatggagtcagtaac |
41896542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 41829067 - 41829151
Alignment:
| Q |
67 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa |
151 |
Q |
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| T |
41829067 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa |
41829151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 41885645 - 41885561
Alignment:
| Q |
67 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttctgcaatggagtcagtaa |
151 |
Q |
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| T |
41885645 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagttgggatttggacttctgcaaagaagtcagtaa |
41885561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 41891889 - 41891821
Alignment:
| Q |
67 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagtgggactctggtcttct |
135 |
Q |
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| T |
41891889 |
aagagaccatttactgaagaatttatgaaattctgcttagaaagatttgaagtgggcctctggtcttct |
41891821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 34453750 - 34453802
Alignment:
| Q |
67 |
aagaggccatttagcgaagaatttatgaaattctgcctggaaagatttgaagt |
119 |
Q |
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| T |
34453750 |
aagaggccatttagtgaagaatttatgaaattctgcttagaaagatttgaagt |
34453802 |
T |
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