View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13702_low_16 (Length: 287)
Name: NF13702_low_16
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 43261386 - 43261122
Alignment:
| Q |
3 |
gtaagttacatttcaatttagtataccaacaaaaacgtaacagcagtgggaataacatgagattccttatccgattcatcatattacgtgtataaacatg |
102 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43261386 |
gtaagttacatttcaattt-gtataccaacaaaaacgtaacagcagtgggaataacatgagattccttatccgattcatcatattacgtgtataaacatg |
43261288 |
T |
|
| Q |
103 |
gttggagaactagatcacactctcatctttactatattgcaccatgcaatattcaccacaagaacttccacgttgcttgcgtgcatgtggcttagagttc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43261287 |
gttggagaactagatcacactctcatctttactatattgcaccatgcaatattcaccacaagaacttccacgttgcttgggtgcatgtggcttagagttc |
43261188 |
T |
|
| Q |
203 |
ttcatatcttcctccatttgacttatagttacttcaatatctagcattcattcttaaccatctact |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43261187 |
ttcatatcttcctccatttgacttatagttacttcaatatctatcattcattcttaaccatctact |
43261122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 43257582 - 43257554
Alignment:
| Q |
193 |
cttagagttcttcatatcttcctccattt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
43257582 |
cttagagttcttcatatcttcctccattt |
43257554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University