View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_low_20 (Length: 269)
Name: NF13702_low_20
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 9643921 - 9644159
Alignment:
| Q |
13 |
agcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccag |
112 |
Q |
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| T |
9643921 |
agcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagatcgagatctgccag |
9644020 |
T |
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| Q |
113 |
gcatatatctttttatgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggaga |
212 |
Q |
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| T |
9644021 |
gcatatatctttttatgtttccatttccgtgtatagtttctatatcaaacggcaatcagtttcagcaaaatttatacaacttttcatgaacaggaggaga |
9644120 |
T |
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| Q |
213 |
acaaaatcttggagaaaagccaccgtcaaaagattgtgg |
251 |
Q |
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| T |
9644121 |
acaaaatcttggagaaaagccaccgtcaaaagattgtgg |
9644159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 56006755 - 56006856
Alignment:
| Q |
14 |
gcagagaggattttaagaagtgcattagagagagctttgatagtcgaagaagttcagaatgaaaactttgacttgaagagacagattgagatctgccagg |
113 |
Q |
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| T |
56006755 |
gcagagaggattttgcaaagtgcactagagaaggctctaataattgaagaagttcaaaatcaaaattttgatttaaagagacagattgatatctaccagg |
56006854 |
T |
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| Q |
114 |
ca |
115 |
Q |
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|| |
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| T |
56006855 |
ca |
56006856 |
T |
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