View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_low_21 (Length: 255)
Name: NF13702_low_21
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_low_21 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 11701817 - 11702013
Alignment:
| Q |
14 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatg |
113 |
Q |
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| T |
11701817 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatg |
11701916 |
T |
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| Q |
114 |
tttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttat |
210 |
Q |
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| T |
11701917 |
tttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttat |
11702013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 11797861 - 11798054
Alignment:
| Q |
14 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatg |
113 |
Q |
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| T |
11797861 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatg |
11797960 |
T |
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| Q |
114 |
tttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
207 |
Q |
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| T |
11797961 |
tttgggttggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatacttgcttctct |
11798054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 11675924 - 11676117
Alignment:
| Q |
14 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatg |
113 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||| |
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| T |
11675924 |
gcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaata |
11676023 |
T |
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| Q |
114 |
tttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
207 |
Q |
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| T |
11676024 |
tttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctct |
11676117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 11684203 - 11684396
Alignment:
| Q |
14 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatg |
113 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||| |
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| T |
11684203 |
gcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaata |
11684302 |
T |
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| Q |
114 |
tttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
207 |
Q |
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| T |
11684303 |
tttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctct |
11684396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 11696020 - 11696213
Alignment:
| Q |
14 |
gcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatg |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| | ||||| ||| |
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| T |
11696020 |
gcagagagggcatcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaata |
11696119 |
T |
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| Q |
114 |
tttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctct |
207 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
11696120 |
tttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatgcttgcttctct |
11696213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 11779035 - 11779195
Alignment:
| Q |
50 |
ttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttag |
149 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | |
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| T |
11779035 |
ttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg |
11779134 |
T |
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| Q |
150 |
gtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttat |
210 |
Q |
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|||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11779135 |
gtgcattcattgctgattcttttcttggacgctatcacacaatcatacttgcttctcttat |
11779195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 16461 - 16658
Alignment:
| Q |
13 |
agcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaat |
112 |
Q |
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|||||||||| |||||||| ||| ||| | || || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
16461 |
agcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatgtgaat |
16560 |
T |
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| Q |
113 |
gtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttat |
210 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16561 |
atttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgattcttttcttggacgctatcacacaatcatacttgcttctcttat |
16658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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