View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13702_low_24 (Length: 240)

Name: NF13702_low_24
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13702_low_24
NF13702_low_24
[»] chr4 (3 HSPs)
chr4 (4-223)||(52403697-52403926)
chr4 (20-62)||(4419188-4419230)
chr4 (20-62)||(39001322-39001364)
[»] chr6 (2 HSPs)
chr6 (20-62)||(17249445-17249487)
chr6 (20-62)||(3137387-3137429)
[»] chr7 (4 HSPs)
chr7 (20-62)||(28517427-28517469)
chr7 (19-62)||(45613981-45614024)
chr7 (31-61)||(38839252-38839282)
chr7 (20-62)||(48539106-48539148)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-62)||(103031-103073)
[»] chr8 (2 HSPs)
chr8 (20-61)||(38815220-38815261)
chr8 (22-62)||(9259434-9259474)
[»] chr3 (1 HSPs)
chr3 (31-60)||(9217248-9217277)
[»] chr1 (1 HSPs)
chr1 (18-62)||(24177649-24177693)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 52403926 - 52403697
Alignment:
Q  4 atgtccaagaatattatctcctaagttcatgaatgttgtgtttacgaagattggttttgacgcgcagcttgtttgttgctcccttgccttctatt----- 98  Q
    |||| ||| ||||| ||||| || ||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||         
T  52403926 atgtacaacaatatcatctcttaggtttataaatgttgtgtttacgaagattggttttgacgcgcaacttgtttgttgctcgcttgccttgtattcatgt 52403827  T
Q  99 ----aatcttcgaaatataattatttttt-attnnnnnnnnncagaagaaaatgccaaaatcaataaggtggaaacgacaagagagtgggtaacatcttt 193  Q
        ||||||||||||||||||||||||| |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52403826 tattaatcttcgaaatataattatttttttattaaaaaaaaacagaagaaaatgccaaaatcaataaggtggaaacgacaagagagtgggtaacatcttt 52403727  T
Q  194 tcaaaattcctagctatttttattcatggt 223  Q
    ||||||||||||||||||||||||||||||    
T  52403726 tcaaaattcctagctatttttattcatggt 52403697  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 4419230 - 4419188
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    ||||||| || |||||||||||||||||||| |||||||||||    
T  4419230 tctcctaggtccatgaatgttgtgtttacgatgattggttttg 4419188  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 39001364 - 39001322
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    ||||||| || |||||||||||||||||||| |||||||||||    
T  39001364 tctcctaggtccatgaatgttgtgtttacgaggattggttttg 39001322  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 17249445 - 17249487
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  17249445 tctcctaagttcatgaatgttgtgtttacgaggattggttttg 17249487  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 3137387 - 3137429
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    ||||||| || |||||||||||||||||||| |||||||||||    
T  3137387 tctcctaggtccatgaatgttgtgtttacgaggattggttttg 3137429  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 28517427 - 28517469
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    |||||||||| |||||||||||||||||||| |||||||||||    
T  28517427 tctcctaagtccatgaatgttgtgtttacgaggattggttttg 28517469  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 45613981 - 45614024
Alignment:
Q  19 atctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    |||||||| || |||||||||||||||||||| |||||||||||    
T  45613981 atctcctaggtccatgaatgttgtgtttacgaggattggttttg 45614024  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 61
Target Start/End: Complemental strand, 38839282 - 38839252
Alignment:
Q  31 catgaatgttgtgtttacgaagattggtttt 61  Q
    |||||||||||||||||||||||||||||||    
T  38839282 catgaatgttgtgtttacgaagattggtttt 38839252  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 48539148 - 48539106
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    ||||||| || |||||||||||||||||||| |||||||||||    
T  48539148 tctcctaggtccatgaatgttgtgtttacgaggattggttttg 48539106  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 103073 - 103031
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    ||||||| || |||||||||||||||||||| |||||||||||    
T  103073 tctcctaggtccatgaatgttgtgtttacgaggattggttttg 103031  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 38815261 - 38815220
Alignment:
Q  20 tctcctaagttcatgaatgttgtgtttacgaagattggtttt 61  Q
    ||||||| || |||||||||||||||||||| ||||||||||    
T  38815261 tctcctaggtccatgaatgttgtgtttacgaggattggtttt 38815220  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 9259434 - 9259474
Alignment:
Q  22 tcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    |||||||| |||||||||||| ||||||||||||| |||||    
T  9259434 tcctaagtccatgaatgttgtatttacgaagattgattttg 9259474  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 9217248 - 9217277
Alignment:
Q  31 catgaatgttgtgtttacgaagattggttt 60  Q
    ||||||||||||||||||||||||||||||    
T  9217248 catgaatgttgtgtttacgaagattggttt 9217277  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 24177649 - 24177693
Alignment:
Q  18 tatctcctaagttcatgaatgttgtgtttacgaagattggttttg 62  Q
    ||||||||| || ||||||||||||||| |||| |||||||||||    
T  24177649 tatctcctaggtccatgaatgttgtgttcacgaggattggttttg 24177693  T

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