View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13702_low_25 (Length: 230)

Name: NF13702_low_25
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13702_low_25
NF13702_low_25
[»] chr4 (22 HSPs)
chr4 (1-219)||(11701621-11701839)
chr4 (1-70)||(11797814-11797883)
chr4 (1-67)||(11675880-11675946)
chr4 (1-67)||(11684159-11684225)
chr4 (1-59)||(11695984-11696042)
chr4 (101-150)||(29517841-29517890)
chr4 (104-148)||(39263632-39263676)
chr4 (104-155)||(572173-572224)
chr4 (92-150)||(54110490-54110549)
chr4 (104-150)||(865421-865467)
chr4 (104-150)||(866279-866325)
chr4 (104-150)||(29145244-29145290)
chr4 (104-150)||(42712141-42712187)
chr4 (116-150)||(6711121-6711155)
chr4 (104-150)||(9170695-9170741)
chr4 (104-150)||(29144856-29144902)
chr4 (104-146)||(48615231-48615273)
chr4 (104-146)||(54109504-54109546)
chr4 (104-149)||(6056415-6056460)
chr4 (104-149)||(48614230-48614275)
chr4 (104-148)||(24573734-24573778)
chr4 (114-150)||(53535606-53535642)
[»] scaffold0294 (1 HSPs)
scaffold0294 (6-72)||(16413-16479)
[»] chr8 (13 HSPs)
chr8 (104-150)||(7601716-7601762)
chr8 (104-150)||(40784812-40784858)
chr8 (104-150)||(42093432-42093478)
chr8 (104-150)||(11596580-11596626)
chr8 (104-155)||(41723214-41723265)
chr8 (104-146)||(14446061-14446103)
chr8 (104-150)||(30427086-30427132)
chr8 (105-148)||(40575870-40575913)
chr8 (104-150)||(15224757-15224803)
chr8 (114-148)||(35627058-35627092)
chr8 (104-150)||(37727107-37727153)
chr8 (116-150)||(39529570-39529604)
chr8 (104-145)||(30136730-30136771)
[»] chr5 (13 HSPs)
chr5 (104-150)||(16899915-16899961)
chr5 (104-150)||(6895207-6895253)
chr5 (104-150)||(40366265-40366311)
chr5 (104-155)||(31559038-31559089)
chr5 (104-150)||(3099096-3099142)
chr5 (104-150)||(39084321-39084367)
chr5 (104-149)||(3098310-3098355)
chr5 (104-149)||(32694780-32694825)
chr5 (104-152)||(31558244-31558292)
chr5 (104-150)||(6894356-6894402)
chr5 (104-150)||(19432550-19432596)
chr5 (88-145)||(29096816-29096874)
chr5 (104-150)||(38914283-38914329)
[»] chr3 (16 HSPs)
chr3 (104-150)||(54280858-54280904)
chr3 (104-150)||(21103611-21103657)
chr3 (104-148)||(42121747-42121791)
chr3 (104-155)||(31090679-31090730)
chr3 (91-148)||(43631220-43631278)
chr3 (104-150)||(43656221-43656267)
chr3 (104-150)||(54295103-54295149)
chr3 (91-150)||(44707557-44707616)
chr3 (104-150)||(41780402-41780448)
chr3 (104-150)||(42489287-42489333)
chr3 (104-150)||(51218110-51218156)
chr3 (99-152)||(34985099-34985152)
chr3 (104-149)||(42488457-42488502)
chr3 (114-150)||(15951522-15951558)
chr3 (104-148)||(43655345-43655389)
chr3 (104-144)||(53427978-53428018)
[»] chr1 (13 HSPs)
chr1 (104-150)||(39841274-39841320)
chr1 (104-149)||(43380545-43380590)
chr1 (104-150)||(51465757-51465803)
chr1 (104-149)||(29373965-29374010)
chr1 (104-148)||(41147287-41147331)
chr1 (104-150)||(171447-171493)
chr1 (104-150)||(1743212-1743258)
chr1 (104-150)||(16878751-16878797)
chr1 (104-150)||(46728723-46728769)
chr1 (105-150)||(39025382-39025427)
chr1 (104-148)||(1744028-1744072)
chr1 (114-150)||(23551686-23551722)
chr1 (104-148)||(30856906-30856950)
[»] chr6 (4 HSPs)
chr6 (105-150)||(3184691-3184736)
chr6 (104-150)||(544345-544391)
chr6 (104-146)||(1175114-1175156)
chr6 (116-150)||(32403993-32404027)
[»] chr2 (17 HSPs)
chr2 (104-149)||(44075841-44075886)
chr2 (104-155)||(39233933-39233984)
chr2 (104-150)||(2215046-2215092)
chr2 (104-150)||(3834932-3834978)
chr2 (104-150)||(18234196-18234242)
chr2 (101-150)||(2076415-2076464)
chr2 (104-155)||(2075679-2075730)
chr2 (104-150)||(5429804-5429850)
chr2 (101-150)||(25455792-25455841)
chr2 (104-146)||(914385-914427)
chr2 (104-150)||(5429055-5429101)
chr2 (104-150)||(8873691-8873737)
chr2 (104-150)||(16011371-16011417)
chr2 (104-150)||(28784824-28784870)
chr2 (104-146)||(35907371-35907413)
chr2 (104-152)||(28783812-28783860)
chr2 (104-148)||(39475410-39475454)
[»] chr7 (13 HSPs)
chr7 (104-150)||(37796603-37796649)
chr7 (104-150)||(41345438-41345484)
chr7 (104-150)||(14419395-14419441)
chr7 (104-150)||(21985585-21985631)
chr7 (104-146)||(26828771-26828813)
chr7 (104-150)||(47723485-47723531)
chr7 (104-144)||(26829629-26829669)
chr7 (104-150)||(6822610-6822656)
chr7 (104-149)||(46196746-46196791)
chr7 (114-150)||(7945349-7945385)
chr7 (114-150)||(11337718-11337754)
chr7 (114-150)||(21984874-21984910)
chr7 (104-148)||(40193866-40193910)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 11701839 - 11701621
Alignment:
Q  1 ccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcatcaccatttaaaaaagaaaatataaagaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11701839 ccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcatcaccatttaaaaaagaaaatataaagaagg 11701740  T
Q  101 tttaatatgataatcgtccctgtaatttggaccagttttgattttcgtccatatagnnnnnnnnctttaaaatacatcactgtaaaccagattaattgag 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||    
T  11701739 tttaatattataatcgtccctgtaatttggaccagttttgattttcgtccatgtagaaaaaaaactttaaaatacatcactgtaaaccagattaattgag 11701640  T
Q  201 atatgaaattgtttaccta 219  Q
    |||||||||||||||||||    
T  11701639 atatgaaattgtttaccta 11701621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11797883 - 11797814
Alignment:
Q  1 ccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcat 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  11797883 ccataatatgataccctctctgccacttccacacctaaacataacattcataattcatttcaattctcat 11797814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11675946 - 11675880
Alignment:
Q  1 ccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattct 67  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||| ||||||    
T  11675946 ccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct 11675880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11684225 - 11684159
Alignment:
Q  1 ccataatatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattct 67  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||  ||||| ||||||    
T  11684225 ccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatttcaattct 11684159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11696042 - 11695984
Alignment:
Q  1 ccataatatgataccctctctgccacttccacacctaaacataacattcataatccatt 59  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||||| ||| ||||    
T  11696042 ccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt 11695984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 29517890 - 29517841
Alignment:
Q  101 tttaatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||    
T  29517890 tttaatatgataatcgtccctgtaatttggttcaattttgattttcgtcc 29517841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 39263632 - 39263676
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    ||||||||  |||||||||||||||||||||||||||||||||||    
T  39263632 aatatgattttcgtccctgtaatttggaccagttttgattttcgt 39263676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 572224 - 572173
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccatata 155  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||||| ||||    
T  572224 aatatgataattgtccctataatttggtccagttttgattttcgtccctata 572173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 54110549 - 54110490
Alignment:
Q  92 taaagaaggtttaa-tatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||| ||||||||| ||||||||||||||||||||||||   ||||||||||||||||||    
T  54110549 taaaaaaggtttaaatatgataatcgtccctgtaatttgtttcagttttgattttcgtcc 54110490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 865421 - 865467
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||    
T  865421 aatatgataatcatccctgtaatttgggtcagttttgattttcgtcc 865467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 866325 - 866279
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||| | | |||||||||||||||||    
T  866325 aatatgataatcgtccctgtaatttagtctagttttgattttcgtcc 866279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 29145290 - 29145244
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||| | | |||||||||||||||    
T  29145290 aatatgataatcgtccctgtaatttggtcaaattttgattttcgtcc 29145244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 42712187 - 42712141
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  42712187 aatatgatagtcgtccttgtaatttggaccagttttgatttttgtcc 42712141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 6711155 - 6711121
Alignment:
Q  116 gtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||||||||| ||||||||    
T  6711155 gtccctgtaatttggaccagttttgaatttcgtcc 6711121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 9170741 - 9170695
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||| | |||| ||||| |||||||||||||||||||    
T  9170741 aatatgataatcgttcttgtattttggtccagttttgattttcgtcc 9170695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 29144902 - 29144856
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||  | | |||||||||||||||    
T  29144902 aatatgataatcgtccctgtaatttgatcaaattttgattttcgtcc 29144856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 48615273 - 48615231
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttc 146  Q
    ||||||||| |||||| |||||||||||| |||||||||||||    
T  48615273 aatatgatattcgtccatgtaatttggacgagttttgattttc 48615231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 54109504 - 54109546
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttc 146  Q
    |||||||||||||||||||||||||   |||||||||||||||    
T  54109504 aatatgataatcgtccctgtaatttactccagttttgattttc 54109546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 6056415 - 6056460
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    |||||||||||||||||| |||||| |  |||||||||||||||||    
T  6056415 aatatgataatcgtccctataatttagggcagttttgattttcgtc 6056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 48614230 - 48614275
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    |||||||||||||||| ||||| |||| |||||||| |||||||||    
T  48614230 aatatgataatcgtccgtgtaaattggtccagttttaattttcgtc 48614275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 24573734 - 24573778
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    ||||||||||  ||| ||||||||||| |||||||||||||||||    
T  24573734 aatatgataactgtctctgtaatttggtccagttttgattttcgt 24573778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 53535642 - 53535606
Alignment:
Q  114 tcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||| || ||||||||||||||||    
T  53535642 tcgtccctgtaatttgggcccgttttgattttcgtcc 53535606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 16479 - 16413
Alignment:
Q  6 atatgataccctctctgccacttccacacctaaacataacattcataatccatttaaattctcatca 72  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  16479 atatgatatcctctctgctacttccacacctaaacataacattcataatccatttcaattctcatca 16413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 7601762 - 7601716
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  7601762 aatatgataatcgtccctgtaatttgggccagttttgattttcgtcc 7601716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 40784812 - 40784858
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  40784812 aatatgataatcgtccctgtaatttggtccagttttgattttcgtcc 40784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 42093432 - 42093478
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  42093432 aatatgataatcgtccctgtaatttgaaccagttttgattttcgtcc 42093478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 11596626 - 11596580
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  11596626 aatatgagaatcgtcccagtaatttggaccagttttgattttcgtcc 11596580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 41723214 - 41723265
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccatata 155  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||| ||||    
T  41723214 aatatgataatcgtccctgtaatttggtcaagttttgatttccgtccctata 41723265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 14446103 - 14446061
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttc 146  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  14446103 aatatgataatcgtccctgtaatttgggccaattttgattttc 14446061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 30427086 - 30427132
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||    
T  30427086 aatatgataatcgtccctgtaatttggttcagtttttattttcgtcc 30427132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 40575913 - 40575870
Alignment:
Q  105 atatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||||||| || ||||||||||||||| ||||||||||    
T  40575913 atatgataatcgtctctataatttggaccagttatgattttcgt 40575870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 15224757 - 15224803
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  ||||||||||||||||| || ||||||||||||||||    
T  15224757 aatatgattttcgtccctgtaatttgggcccgttttgattttcgtcc 15224803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 35627092 - 35627058
Alignment:
Q  114 tcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||||||||||| ||||||||||||||||    
T  35627092 tcgtccctgtaatttggatcagttttgattttcgt 35627058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 37727107 - 37727153
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||| |||||||| |||||||||||||||||||||    
T  37727107 aatatgattttcgtccatgtaatttagaccagttttgattttcgtcc 37727153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Complemental strand, 39529604 - 39529570
Alignment:
Q  116 gtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||| ||||||||||||||||||    
T  39529604 gtccctgtaatttggatcagttttgattttcgtcc 39529570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 145
Target Start/End: Complemental strand, 30136771 - 30136730
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgatttt 145  Q
    |||||||||||||||| ||||||||| |||| ||||||||||    
T  30136771 aatatgataatcgtccatgtaatttgaaccaattttgatttt 30136730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 16899915 - 16899961
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  16899915 aatatgataatcgtccctgtaatttggtccagttttgattttcgtcc 16899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 6895253 - 6895207
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||    
T  6895253 aatatgataatcgtccttgtaatttggtccagttttgattttcgtcc 6895207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 40366265 - 40366311
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  40366265 aatatgataatcgtccctgtaatttgggtcagttttgattttcgtcc 40366311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 31559089 - 31559038
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccatata 155  Q
    ||||||||||||||| ||||||||| | ||||||||||||||||||| ||||    
T  31559089 aatatgataatcgtcactgtaattttggccagttttgattttcgtccctata 31559038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 3099142 - 3099096
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||| |||||||||| |||||||| ||||||||||    
T  3099142 aatatgataatcgtccatgtaatttggtccagttttaattttcgtcc 3099096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 39084367 - 39084321
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  39084367 aatatgataatcgtccctctaatttgggccaattttgattttcgtcc 39084321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 3098310 - 3098355
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||    
T  3098310 aatatgataatcgtccctgtaatttaggtcagttttgattttcgtc 3098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 32694825 - 32694780
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  32694825 aatatgataatcgcccctgtagtttgggccagttttgattttcgtc 32694780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 31558244 - 31558292
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccat 152  Q
    ||||||||||||||| ||||||||||   ||||||||||||||||||||    
T  31558244 aatatgataatcgtcactgtaatttgagtcagttttgattttcgtccat 31558292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 6894356 - 6894402
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||| ||||| |||||| | |||||||||||||||||||    
T  6894356 aatatgataatcatccctctaatttaggccagttttgattttcgtcc 6894402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 19432596 - 19432550
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||| ||||||||||||  ||||||||||||| ||||    
T  19432596 aatatgataatcgttcctgtaatttggttcagttttgatttttgtcc 19432550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 29096816 - 29096874
Alignment:
Q  88 aatataaagaaggtttaa-tatgataatcgtccctgtaatttggaccagttttgatttt 145  Q
    |||||||  ||||||||| ||||| |||||||| |||||||||| ||||||||||||||    
T  29096816 aatataagaaaggtttaaatatgaaaatcgtccatgtaatttggtccagttttgatttt 29096874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 38914329 - 38914283
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||    
T  38914329 aatatgattttcgtccctataatttagaccagttttgattttcgtcc 38914283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 54280858 - 54280904
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  54280858 aatatgataatcgtccctgtaatttggtccagttttgattttcgtcc 54280904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 21103657 - 21103611
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||    
T  21103657 aatatgattttcgtccctgtaatttggaccagttttgattttcgtcc 21103611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 42121791 - 42121747
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||    
T  42121791 aatatgataatcgtccctataatttggaccagttttaattttcgt 42121747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 31090679 - 31090730
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccatata 155  Q
    ||||||||  |||||||||||||||||||| |||||||||||||||| ||||    
T  31090679 aatatgattttcgtccctgtaatttggacccgttttgattttcgtccctata 31090730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 43631278 - 43631220
Alignment:
Q  91 ataaagaaggtttaa-tatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||| |||| |||||||||||||| ||| |||||| |||||||||||||||||    
T  43631278 ataaagaaggcttaaatatgataatcgtccatgtgatttggtccagttttgattttcgt 43631220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 43656267 - 43656221
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||    
T  43656267 aatatgataatcgtccttgtaatttgggacagttttgattttcgtcc 43656221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 54295149 - 54295103
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||| ||||||||||  ||||||||||||||||||    
T  54295149 aatatgataatcgtccatgtaatttgggtcagttttgattttcgtcc 54295103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 44707616 - 44707557
Alignment:
Q  91 ataaagaaggtttaatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||| | || ||||||||  ||||||||||||||||||||  |||||||||||||||    
T  44707616 ataaagaggcttaaatatgattttcgtccctgtaatttggacccattttgattttcgtcc 44707557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 41780448 - 41780402
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||||||||||||||||| ||||||||||| ||||    
T  41780448 aatatgattttcgtccctgtaatttggacccgttttgatttttgtcc 41780402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 42489333 - 42489287
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||| |||| ||||||||||  ||||||||||||||||||    
T  42489333 aatatgataattgtccttgtaatttgggtcagttttgattttcgtcc 42489287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 51218110 - 51218156
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||| |||||| |||||||| ||||||||||| |||||||    
T  51218110 aatatgataattgtccctataatttggtccagttttgatattcgtcc 51218156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 34985099 - 34985152
Alignment:
Q  99 ggtttaatatgataatcgtccctgtaatttggaccagttttgattttcgtccat 152  Q
    |||| ||||| |||||||||  |||||||||| ||| |||||||||||||||||    
T  34985099 ggttaaatataataatcgtctgtgtaatttggtccaattttgattttcgtccat 34985152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 42488457 - 42488502
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    |||||||||||| |||||||||||||   |||||||||||||||||    
T  42488457 aatatgataatcatccctgtaatttgagtcagttttgattttcgtc 42488502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 15951558 - 15951522
Alignment:
Q  114 tcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||| || ||||||||||||||||    
T  15951558 tcgtccctgtaatttgggcccgttttgattttcgtcc 15951522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 43655345 - 43655389
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||||| ||| | |||||||| |||||||||||||||||    
T  43655345 aatatgataatcatccatttaatttgggccagttttgattttcgt 43655389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 53428018 - 53427978
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattt 144  Q
    ||||||||||||||  ||||||||||| |||||||||||||    
T  53428018 aatatgataatcgtttctgtaatttggtccagttttgattt 53427978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 39841320 - 39841274
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  39841320 aatatgataatcgtccctgtaatttggtccagttttgattttcgtcc 39841274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 43380590 - 43380545
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  43380590 aatatgataatcgtccctgtaatttggatcagttttgattttcgtc 43380545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 51465757 - 51465803
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||    
T  51465757 aatatgataatagtccctgtaatttggatcagttttgattttcgtcc 51465803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 29374010 - 29373965
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  29374010 aatatgataatcgtccttgtaatttggatcagttttgattttcgtc 29373965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 41147331 - 41147287
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||||||||| |||||||||| |||||||||||||||||    
T  41147331 aatatgataatcgtccttgtaatttgggccagttttgattttcgt 41147287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 171493 - 171447
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||| ||||||||||   ||||||||||||||||||    
T  171493 aatatgataatcgtctctgtaatttgagtcagttttgattttcgtcc 171447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 1743212 - 1743258
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||| |||||| |  ||||||||||||||||||    
T  1743212 aatatgataatcgtccctataatttagttcagttttgattttcgtcc 1743258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 16878751 - 16878797
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||||||||||||| ||| ||||||||||||||||    
T  16878751 aatatgattttcgtccctgtaatttgaacccgttttgattttcgtcc 16878797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 46728769 - 46728723
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||| ||||| |||||  ||||||||||||||||||    
T  46728769 aatatgataatcgtcactgtagtttgggtcagttttgattttcgtcc 46728723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 39025382 - 39025427
Alignment:
Q  105 atatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||  |||||||||||||| ||| |||||||||||||||    
T  39025382 atatgataattatccctgtaatttggtccaattttgattttcgtcc 39025427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 1744072 - 1744028
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||||| ||  |||||||||| |||||||||||||||||    
T  1744072 aatatgataatcatctatgtaatttgggccagttttgattttcgt 1744028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 23551686 - 23551722
Alignment:
Q  114 tcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||  ||||||||||||||||    
T  23551686 tcgtccctgtaatttggacgcgttttgattttcgtcc 23551722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 30856950 - 30856906
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    |||||||||||| ||||| |||||||| | |||||||||||||||    
T  30856950 aatatgataatcttccctataatttggtctagttttgattttcgt 30856906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 3184691 - 3184736
Alignment:
Q  105 atatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  3184691 atatgataatcgtccctgtaatttggacaagttttgattttcgtcc 3184736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 544345 - 544391
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  544345 aatatgataatcgtctctgtaatttggtccagttttgattttcgtcc 544391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 1175156 - 1175114
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttc 146  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  1175156 aatatgattttcgtccctgtaatttggacccgttttgattttc 1175114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 32403993 - 32404027
Alignment:
Q  116 gtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||| |||||||||||||||    
T  32403993 gtccctgtaatttggaccacttttgattttcgtcc 32404027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 44075841 - 44075886
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  44075841 aatatgataatcgtccctgtaatttggtccagttttgattttcgtc 44075886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 39233984 - 39233933
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccatata 155  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||    
T  39233984 aatatgataatcgtccctgtaatttggttcaattttgattttcgtccatata 39233933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 2215092 - 2215046
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  2215092 aatataataatcgtccctgtaatttgggccagttttgattttcgtcc 2215046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 3834932 - 3834978
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||    
T  3834932 aatatgataatcgtccctgtaatttggtctagttttgattttcgtcc 3834978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 18234196 - 18234242
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  18234196 aatatgatattcgtctctgtaatttggaccagttttgattttcgtcc 18234242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Complemental strand, 2076464 - 2076415
Alignment:
Q  101 tttaatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||    
T  2076464 tttaatatgataattgtccctataatttggtccagttttgattttcgtcc 2076415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 2075679 - 2075730
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccatata 155  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||| ||||    
T  2075679 aatatgataatcgtccctgtaatttaggtcagttttgattttcgtccctata 2075730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 5429850 - 5429804
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  5429850 aatatgataatcgtccctataatttggtccaattttgattttcgtcc 5429804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 25455792 - 25455841
Alignment:
Q  101 tttaatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||| ||||||||| |||||| ||| ||||||||    
T  25455792 tttaatatgataatcgtccccgtaatttgggccagttatgaatttcgtcc 25455841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 914385 - 914427
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttc 146  Q
    ||||||||||||||||||||||||| |  ||||||||||||||    
T  914385 aatatgataatcgtccctgtaatttaggtcagttttgattttc 914427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 5429055 - 5429101
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  5429055 aatatgaaaattgtccctgtaatttggttcagttttgattttcgtcc 5429101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 8873691 - 8873737
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||||||||||||||||| ||||| ||||||||||    
T  8873691 aatatgattttcgtccctgtaatttggacccgttttaattttcgtcc 8873737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 16011371 - 16011417
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||| | |||||||| | |||||||||||||||||||    
T  16011371 aatatgataatcgttcttgtaatttagtccagttttgattttcgtcc 16011417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 28784870 - 28784824
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||| ||||||||| ||||||||||| | |||||||||||||||||    
T  28784870 aatattataatcgtctctgtaatttggtcaagttttgattttcgtcc 28784824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 35907371 - 35907413
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttc 146  Q
    ||||||||||| ||||||||||||||| | |||||||||||||    
T  35907371 aatatgataattgtccctgtaatttggtctagttttgattttc 35907413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 28783812 - 28783860
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtccat 152  Q
    |||||||||||||||| |||||||| | ||| |||| ||||||||||||    
T  28783812 aatatgataatcgtccatgtaatttagtccaattttaattttcgtccat 28783860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 39475410 - 39475454
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    ||||| ||||||||| ||||||||||  |||||||||||||||||    
T  39475410 aatataataatcgtctctgtaatttgatccagttttgattttcgt 39475454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 37796603 - 37796649
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||    
T  37796603 aatatgataatcgtccctgtaatttgggtcagttttgattttcgtcc 37796649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 41345484 - 41345438
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||    
T  41345484 aatatgataatcgtccctataatttggtccagttttgattttcgtcc 41345438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 14419395 - 14419441
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||    
T  14419395 aatatgataatcgtccctgtattttggggcagttttgattttcgtcc 14419441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 21985631 - 21985585
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||||||||||||||||| ||||||||||||||||    
T  21985631 aatatgattttcgtccctgtaatttggacccgttttgattttcgtcc 21985585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 26828771 - 26828813
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttc 146  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  26828771 aatatgataattgtccctgtaatttggtccagttttgattttc 26828813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 47723531 - 47723485
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||    
T  47723531 aatatgattttcgtccctataatttggaccagttttgattttcgtcc 47723485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 26829669 - 26829629
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattt 144  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  26829669 aatatgataatcgtccctgtaatttagtccagttttgattt 26829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 6822610 - 6822656
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||| ||||||||||||||| | ||||||| |||||||||    
T  6822610 aatatgataattgtccctgtaatttggtcaagttttggttttcgtcc 6822656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 46196791 - 46196746
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgtc 149  Q
    ||||||||||||||||||||||||||| |||  ||| |||||||||    
T  46196791 aatatgataatcgtccctgtaatttggtccaaattttattttcgtc 46196746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 7945349 - 7945385
Alignment:
Q  114 tcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    |||||||||||||||||||  ||||||||||||||||    
T  7945349 tcgtccctgtaatttggacacgttttgattttcgtcc 7945385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 11337754 - 11337718
Alignment:
Q  114 tcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||| || ||||||||||||||||    
T  11337754 tcgtccctgtaatttgggcccgttttgattttcgtcc 11337718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 21984874 - 21984910
Alignment:
Q  114 tcgtccctgtaatttggaccagttttgattttcgtcc 150  Q
    ||||||||||||||||| || ||||||||||||||||    
T  21984874 tcgtccctgtaatttgggcccgttttgattttcgtcc 21984910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 40193866 - 40193910
Alignment:
Q  104 aatatgataatcgtccctgtaatttggaccagttttgattttcgt 148  Q
    ||||||||||||||| |||||||||||  || |||||||||||||    
T  40193866 aatatgataatcgtcgctgtaatttgggtcaattttgattttcgt 40193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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