View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13702_low_3 (Length: 539)
Name: NF13702_low_3
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 194 - 522
Target Start/End: Original strand, 2493679 - 2494007
Alignment:
| Q |
194 |
tgacttggaattgtaacaaacgtaaccattaagataaacgcaaaaggatctatcaagaggcattgtccattttaggtttttgtgtaagccctcactattt |
293 |
Q |
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| T |
2493679 |
tgacttggaattgtaacaaacgtaaccattaagataaacgcaaaaggatctatcaagaggcattgtccattttaggtttttgtgtaagccctcactattt |
2493778 |
T |
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| Q |
294 |
ggttgatgctagtttggtgctagcaccaatcgatttgggcttcgattggtgctaatttggttatgtactcgtggtactcaggtttattgattgatcatct |
393 |
Q |
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| T |
2493779 |
ggttgatgctagtttggtgctagcaccaatcgatttgggcttcgattggtgctaatttggttatgtactcgtggtactcaggtttattgattgatcatct |
2493878 |
T |
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| Q |
394 |
ctcgatcgggtttttattggttctgggttgcttttgttatttttgaaatatgttaggatctgttattgtgtttgtagtgctcagccctgttgattgacca |
493 |
Q |
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| T |
2493879 |
ctcgatcgggtttttattggttctgggttgctttcgttatttttgaaatatgttagggtctgttattgtgtttgtagtgctcagccctgttgattgacca |
2493978 |
T |
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| Q |
494 |
tctgttgatctggatattgattggctctg |
522 |
Q |
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| T |
2493979 |
tctgtcgatctggatattgattggctctg |
2494007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 2493504 - 2493634
Alignment:
| Q |
19 |
acaaatcaatagtcaaaacagctgaaaataacgatggtattttatatcaaatcatttttatatgaaatacaatattttgctatgtaccaaaaaagaatta |
118 |
Q |
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| T |
2493504 |
acaaatcaatagtcaaaacagctgaaaataacgatggtattttatatcaaatcatttttatatgaaatacaatattttgctatgtaccaaaaaagaatta |
2493603 |
T |
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| Q |
119 |
atcattcaacttaagatagaaatatttgacc |
149 |
Q |
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| T |
2493604 |
atcattcaacttaagatagaaatatttgacc |
2493634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 2490613 - 2490647
Alignment:
| Q |
194 |
tgacttggaattgtaacaaacgtaaccattaagat |
228 |
Q |
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| T |
2490613 |
tgacttggaattttaacaaacgtaaccattaagat |
2490647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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