View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13702_low_9 (Length: 382)
Name: NF13702_low_9
Description: NF13702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13702_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 112 - 367
Target Start/End: Complemental strand, 31328122 - 31327887
Alignment:
| Q |
112 |
actttaaatgcttgtctgacttatttttctactatctctttctagtaaagagcactttcatagtctttttccttcactgtgacaagtgttatgttgcaat |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31328122 |
actttaaatgcttgtatgacttatttttctactatctctttctagcaaagagcacttccatagtctttttccttcacagtgacaagtgttatgttgcaat |
31328023 |
T |
|
| Q |
212 |
tttgactcgagagaacctattttatgtgatgggttatatgggtcagcatcaacatggacaaaacatgaaaagtcttaacgtgatggtatcaattttaatg |
311 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31328022 |
ttt--------------------atgtgatgggttatatgggtcagcatcaacatggacaaaacatgaaaagtcttaacgtgatggtatcaattttaatg |
31327943 |
T |
|
| Q |
312 |
agcatgtagctatatgatattctaaaacactgcagctaataaccatgtggagaggt |
367 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31327942 |
agcatgtacctatatgatattctaaaacactgcagctaataaccatgtggagaggt |
31327887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 31328669 - 31328576
Alignment:
| Q |
13 |
aatatagtaaaaataggttatgcatgtcttgggatnnnnnnnnnn---gttgagtcatgttttgctcatcgtctaaaatgaaattaaaacaaaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
31328669 |
aatatagtaaaaataggttatgcatgtcttgggataaaaaaaaaaaaggttgagtcatgttttgctcatcgtctaaaatgaaactaaaataaaa |
31328576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 116 - 330
Target Start/End: Complemental strand, 23493596 - 23493384
Alignment:
| Q |
116 |
taaatgcttgtctgacttatttttctactatctctttctagtaaagagcactttcatagtctttttccttcactgtgacaagtgttatgttgcaattttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23493596 |
taaatgcttgtctgacttatttttctactatctctttcaagtaaagagcactttcatagtctttttccttcacaatgacaagtgttatgttgcaattttg |
23493497 |
T |
|
| Q |
216 |
actcgagagaacctattttatgtgatgggttatatgggtcagcatcaacatggacaaaacatgaaaagtcttaacgtgatggtatcaattttaatgagca |
315 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
23493496 |
acttgagagaacctattttatgtgatgggt--tatgagtcagcatcaacatggacaaaacatggaaagtctttatgtgatagtatcaattttaatgagca |
23493399 |
T |
|
| Q |
316 |
tgtagctatatgata |
330 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
23493398 |
tgtacctatatgata |
23493384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University