View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13703_high_11 (Length: 295)
Name: NF13703_high_11
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 39177733 - 39177994
Alignment:
| Q |
22 |
ggaaaggtaatcaatgtttacatttactataatcaactaatcatgttacattgaggacatactggatagataacaannnnnnnnnnnnnatagttgtttt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
39177733 |
ggaaaggtaatcaatgtttacatttactataatcaactaatcatgttacattgaggacatactggatggataacaatttttttttt---atagttgtttt |
39177829 |
T |
|
| Q |
122 |
ctgctcttccgtcggtgaggtggcaaatagatcctcaaatgcgacgtaaagatctcttttctcctttctcatatccagtggcatgccctctcctttgaac |
221 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39177830 |
ctgctcttccgtcagtgaggtggcaaatagaacctcaaatgcgacgtaaagatctcttttctcctttctcatatccagtggcat-ccctctcctttgaac |
39177928 |
T |
|
| Q |
222 |
ttcctcacttgctttggatttgtgtttctctaagggttcaaagaagtatgtcagatctgcgccttt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39177929 |
ttcctcacttgctttggatttgtgtttctctaagggttcaaagaagtatgtcagatctgcgccttt |
39177994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 39168178 - 39168256
Alignment:
| Q |
178 |
ttttctcctttctcatatccagtggcatgccctctcctttgaacttcctcac-ttgctttggatttgtgtttctctaag |
255 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||| |||||||| |||| |||||||||||||||| ||| ||||| |
|
|
| T |
39168178 |
ttttctcttttctcataagcagtgacatgccctctcctctgaacttcttcactttgctttggatttgtgattccctaag |
39168256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 44691574 - 44691465
Alignment:
| Q |
154 |
cctcaaatgcgacgtaaagatctcttttctcctttctcatatccagtggcatgccctctcctttgaacttcctcacttgctttggatttgtgtttctcta |
253 |
Q |
| |
|
||||||| | |||||||||||||| ||||| | | ||| ||| || |||||| ||||| ||||||||||||||||||||||| ||||||||| ||| || |
|
|
| T |
44691574 |
cctcaaaagtgacgtaaagatctcctttcttcgtgctcgtatgcaatggcataccctcccctttgaacttcctcacttgcttcggatttgtgattccctg |
44691475 |
T |
|
| Q |
254 |
agggttcaaa |
263 |
Q |
| |
|
|||| ||||| |
|
|
| T |
44691474 |
agggatcaaa |
44691465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University