View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_high_12 (Length: 290)
Name: NF13703_high_12
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 106 - 275
Target Start/End: Original strand, 31737190 - 31737359
Alignment:
| Q |
106 |
taatttgtataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatc |
205 |
Q |
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| T |
31737190 |
taatttgtataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaatcaaagatataggacgataatc |
31737289 |
T |
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| Q |
206 |
cttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtatt |
275 |
Q |
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| T |
31737290 |
cttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttggtatt |
31737359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 31737092 - 31737124
Alignment:
| Q |
8 |
cagcacagacagcagtagcgcacccatacagta |
40 |
Q |
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| T |
31737092 |
cagcacagacagcagtagcgcacccatacagta |
31737124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 270
Target Start/End: Original strand, 8247039 - 8247195
Alignment:
| Q |
114 |
ataatcgaattcatcaccccggccaaacgccttgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaag |
213 |
Q |
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| T |
8247039 |
ataatagaattcataattcccgccaaacgccttgttaaaactttggcgagtaatttgtataaactacctagcaatgaaatagagcggtaatccttcatag |
8247138 |
T |
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| Q |
214 |
ccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttg |
270 |
Q |
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| T |
8247139 |
ccattggagatgaaactttcgatatcaatgcaacaaaatacaccaacattccttttg |
8247195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 14457274 - 14457238
Alignment:
| Q |
225 |
gaaacttttggaatcaaagcaacaaaataagctaaca |
261 |
Q |
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| T |
14457274 |
gaaacttttggaatcaaagccacaaaataagccaaca |
14457238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 12829238 - 12829326
Alignment:
| Q |
183 |
agcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatcccttttgg |
271 |
Q |
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| T |
12829238 |
agcaaagaaatagggtggtaatccttcaaagccctaggagatgaaacttccggaatcaaagcaacaaaatacgctaacaaaccttttgg |
12829326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 40387947 - 40388063
Alignment:
| Q |
146 |
tgctagaaccttggcaagtaatttgtataaacaaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagca |
245 |
Q |
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||||| ||||||||| |||||||| ||||| || || ||||| |||| || | | ||||||||||| |||||| |||||| ||||| |||||||||| |
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| T |
40387947 |
tgctaaaaccttggctagtaatttatataagcatcctagcaagaatattggcctaaaatccttcaaatccatcgaagatgacactttgggaatcaaagtc |
40388046 |
T |
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| Q |
246 |
acaaaataagctaacat |
262 |
Q |
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| T |
40388047 |
acaaaaaaagccaacat |
40388063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 40197872 - 40197959
Alignment:
| Q |
178 |
aaccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacatccc |
265 |
Q |
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| T |
40197872 |
aaccaagcaaagaaatcggttgaaaatccctcaaagccataggggacaaaactttaggaattaacgcaacaaaataagccaacatccc |
40197959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 4901850 - 4901768
Alignment:
| Q |
180 |
ccaagcaaagatataggacgataatccttcaaagccatcggagatgaaacttttggaatcaaagcaacaaaataagctaacat |
262 |
Q |
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| T |
4901850 |
ccaagcaaagaaatgggacgaaaatccttaaaagccaaaggggaagaaatctttggaattaaagctacaaagtaagctaacat |
4901768 |
T |
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