View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_high_17 (Length: 245)
Name: NF13703_high_17
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 9453179 - 9452968
Alignment:
| Q |
16 |
atgaaagccatgcatgaatccattgaagccgagaaggcagaggaaggcttgatcggtcatagtcttgcacaaaaactaaagggtgcttggtctaatgacg |
115 |
Q |
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| T |
9453179 |
atgaaagccatgcatgaatccattgaagccgagaaggcagaggaaggcttgatcggtcatagtcttgcacaaaaactaaagggtgcttggtctaatgacg |
9453080 |
T |
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| Q |
116 |
tagttcgaagaggactctacgcaggcattactgtccaagttgttcaacaatttgtcggtattaatacagtcatgtattacagcccaactatagttcagtt |
215 |
Q |
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| T |
9453079 |
tagttcgaagaggactctacgcaggcattactgtccaagttgttcaacaatttgtcggtattaatacagtcatgtattacagcccaactatagttcagtt |
9452980 |
T |
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| Q |
216 |
tgctggaattgc |
227 |
Q |
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||| |||||||| |
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| T |
9452979 |
tgcaggaattgc |
9452968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 9441951 - 9441737
Alignment:
| Q |
13 |
gagatgaaagccatgcatgaatccattgaagccgagaaggcagaggaaggcttgatcggtcatagtcttgcacaaaaactaaagggtgcttggtctaatg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
9441951 |
gagatgaaagccatgcatgaatccattgaagccgagaaggcagaggatggcttgatcggccatagtcttgcacaaaaactaaagggtgcctggtctaatg |
9441852 |
T |
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| Q |
113 |
acgtagttcgaagaggactctacgcaggcattactgtccaagttgttcaacaatttgtcggtattaatacagtcatgtattacagcccaactatagttca |
212 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
9441851 |
acgtagttcgaagaggactctacgcaggcatcactgtccaagttgttcaacaaattgtcggtattaatacaatcatgtattacagcccaaccatagttca |
9441752 |
T |
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| Q |
213 |
gtttgctggaattgc |
227 |
Q |
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| T |
9441751 |
gtttgctggaattgc |
9441737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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