View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_high_18 (Length: 243)
Name: NF13703_high_18
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 37901306 - 37901521
Alignment:
| Q |
12 |
agagattagaaatctaaggatccgcacgacggcacgagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtccggtacaatgca |
111 |
Q |
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| T |
37901306 |
agagattagaaatctaaggatccgcacgacggcacaagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtctggtacaatgca |
37901405 |
T |
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| Q |
112 |
atgaagaaagcgacgatacctgcatgttaagattgagaaaacaaatatggtcaatgcagtttacagtagaagtactattcaagttgtaaatagagtaaca |
211 |
Q |
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| T |
37901406 |
atgaagaaagcgacgatacctgcatgttaagattgagaaaacaaatatggtcaatccagtttacagtagaagtactattcaagttgtaaatagagtaaca |
37901505 |
T |
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| Q |
212 |
taacataccatggttt |
227 |
Q |
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| T |
37901506 |
taacataccatggttt |
37901521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 37907817 - 37908032
Alignment:
| Q |
12 |
agagattagaaatctaaggatccgcacgacggcacgagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtccggtacaatgca |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37907817 |
agagattagaaatctaaggatccgcacgacggcacaagttagccaaatgagggtgggtaagaagagttgagaagaatttgtgaatgtctggtacaatgca |
37907916 |
T |
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| Q |
112 |
atgaagaaagcgacgatacctgcatgttaagattgagaaaacaaatatggtcaatgcagtttacagtagaagtactattcaagttgtaaatagagtaaca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37907917 |
atgaagaaagcgacgatacctgcatgttaagattgagaaaacaaatatggtcaatccagtttacagtagaagtactattcaagttgtaaatagagtaaca |
37908016 |
T |
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| Q |
212 |
taacataccatggttt |
227 |
Q |
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|||||||||||||||| |
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| T |
37908017 |
taacataccatggttt |
37908032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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