View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_high_2 (Length: 488)
Name: NF13703_high_2
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 249 - 485
Target Start/End: Original strand, 4953743 - 4953979
Alignment:
| Q |
249 |
caatttcattcttaaactctcttaannnnnnnatctgtaattggataaactcgtttgattatgacattataatcaataataccattatattggagacaac |
348 |
Q |
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| T |
4953743 |
caatttcattcttaaactctcttaatttttttatctgtaattggataaactcgtttgattatgacattataatcaataataccattatattggagacaac |
4953842 |
T |
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| Q |
349 |
ctttgtacactatacctaggtttccacttccaattattcgatttttatcaaagttgttggttgattttttaatactggctagagaaaattgatgacataa |
448 |
Q |
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| T |
4953843 |
ctttgtacactatacctaggtttccacttccaattattcgatttttatcaaagttgttggttgattttttaatactggctagagaaaattgatgacataa |
4953942 |
T |
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| Q |
449 |
ctcttctattactattggattgtgcttcctatgcttc |
485 |
Q |
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| T |
4953943 |
ctcttctattactattggattgtgcttcctatgcttc |
4953979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 4953569 - 4953746
Alignment:
| Q |
19 |
ttttgttcctgtgtgaagatagtgtactccacatgctgctccaatgcaaatttttagcctttgtttccatgtaagaggttcaattttcatgccactatta |
118 |
Q |
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| T |
4953569 |
ttttgttcctgtgtgaagatagtgtactccacatgctgctccaatgcaaatttttagcctttgtttccatgtaagaggttcaattttcatgccactatta |
4953668 |
T |
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| Q |
119 |
tgtacacaacaaagatgattatagagagaaccattggaattataatcatacacaataatcttctcatctttatggtcacaat |
200 |
Q |
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| T |
4953669 |
tgtacacaacaaagatgattatagagagaaccattggaattataatcat----aataatcttctcatctttatggtcacaat |
4953746 |
T |
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