View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13703_high_20 (Length: 227)

Name: NF13703_high_20
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13703_high_20
NF13703_high_20
[»] chr3 (2 HSPs)
chr3 (6-227)||(46360416-46360633)
chr3 (109-156)||(30122036-30122083)
[»] chr4 (2 HSPs)
chr4 (109-156)||(23673437-23673484)
chr4 (104-156)||(52840280-52840332)
[»] chr2 (3 HSPs)
chr2 (109-156)||(41517445-41517492)
chr2 (35-72)||(21738246-21738283)
chr2 (107-156)||(472424-472473)
[»] chr6 (1 HSPs)
chr6 (109-166)||(24252962-24253019)
[»] chr7 (3 HSPs)
chr7 (109-161)||(2399781-2399833)
chr7 (102-147)||(23097575-23097620)
chr7 (30-66)||(41150034-41150070)
[»] chr1 (1 HSPs)
chr1 (107-156)||(5700113-5700162)
[»] chr5 (1 HSPs)
chr5 (35-79)||(4695128-4695172)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 46360633 - 46360416
Alignment:
Q  6 aattactatttaaaaaagacaaatattcacaatgcactgattatataaaatttcataaaaacttactccctccaatcacatttatttgctcataaaaagt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||    |||||||    
T  46360633 aattactatttaaaaaagacaaatattcacaatgcactgattatataaaatttcataaaaacttactccctccagtcacatttataagc----aaaaagt 46360538  T
Q  106 taaatacattaattattcaatatgcttaaaaagttatattttgcttataaacatgatcagataaaatactatttaatgtcttaaaaagtgctcatagaca 205  Q
    || ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||    
T  46360537 tagatatattaattattcaatatgcttaaaaaattatattttgcttataaacgtgaccagataaaatactatttaaggtcttaaaaaatgctcatagaca 46360438  T
Q  206 atagttatcattttccataaat 227  Q
    || |||||||||||||||||||    
T  46360437 atcgttatcattttccataaat 46360416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 30122036 - 30122083
Alignment:
Q  109 atacattaattattcaatatgcttaaaaagttatattttgcttataaa 156  Q
    |||||||||||||||||||| | |||||| |||| |||||||||||||    
T  30122036 atacattaattattcaatatacctaaaaaattattttttgcttataaa 30122083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 23673437 - 23673484
Alignment:
Q  109 atacattaattattcaatatgcttaaaaagttatattttgcttataaa 156  Q
    |||||||||||||||||||| | ||||||||||| |||||||||||||    
T  23673437 atacattaattattcaatatacctaaaaagttattttttgcttataaa 23673484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 52840332 - 52840280
Alignment:
Q  104 gttaaatacattaattattcaatatgcttaaaaagttatattttgcttataaa 156  Q
    |||| |||||||||||||| ||| | |||||||| |||| |||||||||||||    
T  52840332 gttagatacattaattatttaatgtacttaaaaaattattttttgcttataaa 52840280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 41517445 - 41517492
Alignment:
Q  109 atacattaattattcaatatgcttaaaaagttatattttgcttataaa 156  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||||    
T  41517445 atacattaattattcaatgtacttaaaaagttattttttgcttataaa 41517492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 21738283 - 21738246
Alignment:
Q  35 caatgcactgattatataaaatttcataaaaacttact 72  Q
    |||||||||||||||||||||||| |||||||||||||    
T  21738283 caatgcactgattatataaaattttataaaaacttact 21738246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 472473 - 472424
Alignment:
Q  107 aaatacattaattattcaatatgcttaaaaagttatattttgcttataaa 156  Q
    |||||||||| ||||||||||  | ||||||||||||||||| |||||||    
T  472473 aaatacattagttattcaataaacctaaaaagttatattttgtttataaa 472424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 24252962 - 24253019
Alignment:
Q  109 atacattaattattcaatatgcttaaaaagttatattttgcttataaacatgatcaga 166  Q
    |||||||||||||||||| | | ||||||||||| ||||||||||||| |||| ||||    
T  24252962 atacattaattattcaatgtacctaaaaagttattttttgcttataaatatgaccaga 24253019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 2399781 - 2399833
Alignment:
Q  109 atacattaattattcaatatgcttaaaaagttatattttgcttataaacatga 161  Q
    |||||||||||||||||||| ||||||||||||| ||||  ||||||| ||||    
T  2399781 atacattaattattcaatatacttaaaaagttattttttatttataaatatga 2399833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 23097575 - 23097620
Alignment:
Q  102 aagttaaatacattaattattcaatatgcttaaaaagttatatttt 147  Q
    ||||||||||||||||||||||||| | | ||||||||||| ||||    
T  23097575 aagttaaatacattaattattcaatctacctaaaaagttatttttt 23097620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 41150070 - 41150034
Alignment:
Q  30 attcacaatgcactgattatataaaatttcataaaaa 66  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  41150070 attcacaatgcactgattatacaaattttcataaaaa 41150034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 5700113 - 5700162
Alignment:
Q  107 aaatacattaattattcaatatgcttaaaaagttatattttgcttataaa 156  Q
    |||| ||||||||||||||| | ||||||||||| | |||||||||||||    
T  5700113 aaatgcattaattattcaatgtacttaaaaagttgttttttgcttataaa 5700162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 4695128 - 4695172
Alignment:
Q  35 caatgcactgattatataaaatttcataaaaacttactccctcca 79  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||    
T  4695128 caatgcactgattatacaaacttccataaaaaattactccctcca 4695172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University