View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13703_high_6 (Length: 342)

Name: NF13703_high_6
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13703_high_6
NF13703_high_6
[»] chr1 (18 HSPs)
chr1 (12-332)||(9420646-9420966)
chr1 (12-332)||(9437729-9438049)
chr1 (141-331)||(8939205-8939395)
chr1 (126-331)||(8926779-8926984)
chr1 (128-271)||(9236484-9236627)
chr1 (138-332)||(8962131-8962325)
chr1 (138-240)||(9377637-9377739)
chr1 (39-265)||(8861788-8862014)
chr1 (35-101)||(9466717-9466783)
chr1 (181-312)||(9466863-9466994)
chr1 (35-79)||(8939457-8939501)
chr1 (35-94)||(9257492-9257551)
chr1 (35-94)||(9300159-9300218)
chr1 (36-91)||(9495346-9495401)
chr1 (198-316)||(8979347-8979465)
chr1 (126-312)||(9257583-9257769)
chr1 (126-332)||(9299921-9300127)
chr1 (35-79)||(8927031-8927075)
[»] chr3 (1 HSPs)
chr3 (126-332)||(9171324-9171530)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 9420646 - 9420966
Alignment:
Q  12 agaatttgctgctcacaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaatggtccatat 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9420646 agaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaatggtccatat 9420745  T
Q  112 catcaggtcgggttatgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9420746 catcaggtcgggttatgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaac 9420845  T
Q  212 aacattaatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaatt 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9420846 aacattgatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagccacaagaatt 9420945  T
Q  312 tcattagataatttacctttg 332  Q
    |||||||||||||||||||||    
T  9420946 tcattagataatttacctttg 9420966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 332
Target Start/End: Original strand, 9437729 - 9438049
Alignment:
Q  12 agaatttgctgctcacaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaatggtccatat 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9437729 agaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaatggtccatat 9437828  T
Q  112 catcaggtcgggttatgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9437829 catcaggtcgggttatgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaac 9437928  T
Q  212 aacattaatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaatt 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9437929 aacattgatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagccacaagaatt 9438028  T
Q  312 tcattagataatttacctttg 332  Q
    |||||||||||||||||||||    
T  9438029 tcattagataatttacctttg 9438049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 331
Target Start/End: Complemental strand, 8939395 - 8939205
Alignment:
Q  141 gaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgatgaatttttcccatag 240  Q
    ||||||||||| || || | |||||| | |||||| ||  |||||||||| ||||| |||| ||| || ||||||||||  |||||||||||||||||||    
T  8939395 gaaccatttgggaaaaagtcataaaccaaagcacgataaaatccatcggcacaaaagccaagcaaccggacaacattaacatgatgaatttttcccatag 8939296  T
Q  241 ctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaatttcattagataatttaccttt 331  Q
     |  |||||| || ||||||||| | ||||| |||||||| ||  ||||||||||||| || |||||||||| | | ||||||||||||||    
T  8939295 ttcccacttcatttatgaactctctcccatctccctcggtattactaagcatcttcacggcaacaagaatttgactcgataatttaccttt 8939205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 331
Target Start/End: Complemental strand, 8926984 - 8926779
Alignment:
Q  126 atgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgat 225  Q
    |||||||| || ||||||||||| || || || | |||||| |||||||| ||  |||||||||| ||||| |||| ||| |||||||||||||  ||||    
T  8926984 atgaagttttgcaacgaaccattcgggaaaaagtcataaaccagagcacgataaaatccatcggcacaaaagccaagcaaccgaacaacattaacatgat 8926885  T
Q  226 gaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaatttcattagataattt 325  Q
    | ||||||||||||| |  ||| || || ||||||||  | ||||| ||||| || ||  |||||||||||||||| || | ||||| ||| ||||||||    
T  8926884 ggatttttcccatagttcccacctcatttatgaactcactcccatctccctctgtattactaagcatcttcacagcaaccataatttgattcgataattt 8926785  T
Q  326 accttt 331  Q
    ||||||    
T  8926784 accttt 8926779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 271
Target Start/End: Original strand, 9236484 - 9236627
Alignment:
Q  128 gaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgatga 227  Q
    ||||||||| || || ||||| |||||||||| ||| ||||||||||||| | ||||||| || |||||||| |  |||||||||||||| |  ||||||    
T  9236484 gaagttctgcaaggagccattcggaaagaaatcatagacaagagcacggtggaatccatcagcacaaaatccgagtaagcgaacaacattgacatgatga 9236583  T
Q  228 atttttcccatagctttcacttcgttaatgaactcttttccatc 271  Q
    ||||||||||||| |   |||||||| ||||| || ||||||||    
T  9236584 atttttcccatagttccgacttcgttgatgaaatcgtttccatc 9236627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 332
Target Start/End: Complemental strand, 8962325 - 8962131
Alignment:
Q  138 aacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgatgaatttttccca 237  Q
    ||||||||||| || || || | |||||| | |||||| ||  ||||||| |||||||| ||||  || || ||||||||||  ||||| ||||||||||    
T  8962325 aacgaaccattagggaaaaagtcataaaccaaagcacgataaaatccatcagcgcaaaagccaagtaaccggacaacattaacatgatggatttttccca 8962226  T
Q  238 tagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaatttcattagataatttacctttg 332  Q
    ||| |   ||||| || ||||||||| | ||||| || || || || ||||||||||||||||| |||||||||| | | |||||||||||||||    
T  8962225 tagttcctacttcatttatgaactctctcccatctccttctgtattattaagcatcttcacagcaacaagaatttgactcgataatttacctttg 8962131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 9377739 - 9377637
Alignment:
Q  138 aacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgatgaatttttccca 237  Q
    ||||| |||||||||||||||| ||| ||||||||||||| | ||||||| || || ||||| | ||||||||||||||| |  ||||||||||||||||    
T  9377739 aacgacccatttggaaagaaatcatagacaagagcacggtggaatccatcagcacagaatccgagcaagcgaacaacattgaaatgatgaatttttccca 9377640  T
Q  238 tag 240  Q
    |||    
T  9377639 tag 9377637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 265
Target Start/End: Original strand, 8861788 - 8862014
Alignment:
Q  39 agatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaatggtccatatcatcaggtcgggttatgaagttctgta 138  Q
    ||||||||||| |||||||| || || | | |||||||||||||||||||||| || |  ||||||||| | | ||| ||| |   ||||||| | ||||    
T  8861788 agatactcaattcctttggcaattcctataccaatttgttgtagcttctcccaccccatgaaatggtccttgttatctggtggaaatatgaagctttgta 8861887  T
Q  139 acgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgatgaatttttcccat 238  Q
     ||||||||||||||| ||||| || |||||||| ||||    |||||| ||||| || |||| ||| ||||| || || ||||| || ||||| |||||    
T  8861888 gcgaaccatttggaaataaattgtagacaagagcgcggtgaattccatctgcgcagaagccaagcaaacgaaccacgttgatgtggtggattttgcccat 8861987  T
Q  239 agctttcacttcgttaatgaactcttt 265  Q
    |  |  |||||| || |||||||||||    
T  8861988 aattcccacttcattgatgaactcttt 8862014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 9466717 - 9466783
Alignment:
Q  35 gtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatccgagaaaa 101  Q
    ||||||||||||||| || ||||||||||| |||||||||||||| ||| | |||||||| ||||||    
T  9466717 gtgaagatactcaattccattggctatgcctagagcaatttgttgcagcgtgtcccatccaagaaaa 9466783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 312
Target Start/End: Original strand, 9466863 - 9466994
Alignment:
Q  181 atccatcggcgcaaaatccaaccaagcgaacaacattaatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggt 280  Q
    ||||||| ||||| || |||| ||| || ||||||||||  ||||| ||||||||||||| |  |||||| || |||||||| || ||||| ||||| ||    
T  9466863 atccatcagcgcagaagccaagcaaacggacaacattaagatgatggatttttcccatagttcccacttcatttatgaactccttaccatctccctcagt 9466962  T
Q  281 gtttttaagcatcttcacagccacaagaattt 312  Q
    ||| || |||||||| || || || |||||||    
T  9466963 gttattgagcatcttaacggcaacgagaattt 9466994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 8939501 - 8939457
Alignment:
Q  35 gtgaagatactcaatacctttggctatgccaagagcaatttgttg 79  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||    
T  8939501 gtgaagatactcaatcccattggcaatgccaagagcaatttgttg 8939457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 9257492 - 9257551
Alignment:
Q  35 gtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatcc 94  Q
    |||||||||||| || || ||||||||||| |||||||||||||| | ||| ||||||||    
T  9257492 gtgaagatactcgattccattggctatgcctagagcaatttgttgcaacttgtcccatcc 9257551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 9300218 - 9300159
Alignment:
Q  35 gtgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctcccatcc 94  Q
    |||||||||||| || || ||||||||||| |||||||||||||| | ||| ||||||||    
T  9300218 gtgaagatactctattccattggctatgcctagagcaatttgttgcaacttatcccatcc 9300159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 9495401 - 9495346
Alignment:
Q  36 tgaagatactcaatacctttggctatgccaagagcaatttgttgtagcttctccca 91  Q
    |||||||||||||| ||||| ||||| ||||| ||||||| ||||| |||||||||    
T  9495401 tgaagatactcaattcctttcgctattccaagcgcaatttcttgtaacttctccca 9495346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 8979347 - 8979465
Alignment:
Q  198 ccaaccaagcgaacaacattaatgtgatgaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttca 297  Q
    |||| ||| ||||||||||| ||||| || ||||||||||||  |  ||||||| ||||||||||||| || || || || || || || || |||||||    
T  8979347 ccaagcaatcgaacaacattgatgtggtggatttttcccataattcccacttcgctaatgaactctttcccgtctccttctgtattgttgagaatcttca 8979446  T
Q  298 cagccacaagaatttcatt 316  Q
    |||| || ||||| |||||    
T  8979447 cagcaaccagaatctcatt 8979465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 312
Target Start/End: Original strand, 9257583 - 9257769
Alignment:
Q  126 atgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgat 225  Q
    ||||| ||||| |||||||||||||| ||||| | ||| || |||||||| |   |||||||||| ||||| |||| |||||| ||| |||| |  || |    
T  9257583 atgaatttctgcaacgaaccatttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaagcggacagcattgagatggt 9257682  T
Q  226 gaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaattt 312  Q
    | ||||| ||||||| |  |||||| || |||||||| || ||||| || || | ||| || | |||||| ||||| || |||||||    
T  9257683 ggattttacccatagttcccacttcatttatgaactccttcccatctccttctgcgttattgatcatcttaacagcaactagaattt 9257769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 332
Target Start/End: Complemental strand, 9300127 - 9299921
Alignment:
Q  126 atgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgat 225  Q
    ||||| ||||| ||||||||| |||| ||||| | ||| || |||||||| |   |||||||||| ||||| |||| ||| || |||||||| |  || |    
T  9300127 atgaatttctgcaacgaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggt 9300028  T
Q  226 gaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaatttcattagataattt 325  Q
    | ||||| ||||| | |  |||||| || |||||||| || ||||| || || | ||| || |||||||| ||||| ||  |||||| | | ||||||||    
T  9300027 ggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataattt 9299928  T
Q  326 acctttg 332  Q
    |||||||    
T  9299927 acctttg 9299921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 8927075 - 8927031
Alignment:
Q  35 gtgaagatactcaatacctttggctatgccaagagcaatttgttg 79  Q
    ||||||||||||||| || ||||| ||||| ||||||||||||||    
T  8927075 gtgaagatactcaatcccattggcaatgcctagagcaatttgttg 8927031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 332
Target Start/End: Complemental strand, 9171530 - 9171324
Alignment:
Q  126 atgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattaatgtgat 225  Q
    ||||| ||||| || ||||||||||| || |||| ||| || |||||||| |   |||||||||||||||| |||| ||| || |||||||| |  || |    
T  9171530 atgaatttctgcaaagaaccatttgggaaaaaatcatagactagagcacgatgaaatccatcggcgcaaaagccaagcaaacggacaacatttagatggt 9171431  T
Q  226 gaatttttcccatagctttcacttcgttaatgaactcttttccatcaccctcggtgtttttaagcatcttcacagccacaagaatttcattagataattt 325  Q
    | ||||| ||||||| |  |||||| || |||||||| || ||||| ||||| ||||| || |||||||| ||| | || |||||||   | ||||||||    
T  9171430 ggattttgcccatagttcccacttcatttatgaactccttcccatctccctctgtgttatttagcatcttaacaccaactagaatttggcttgataattt 9171331  T
Q  326 acctttg 332  Q
    |||||||    
T  9171330 acctttg 9171324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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