View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13703_low_1 (Length: 943)
Name: NF13703_low_1
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_1 |
 | |
|
| [»] scaffold0194 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0194 (Bit Score: 862; Significance: 0; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 16 - 933
Target Start/End: Complemental strand, 16271 - 15353
Alignment:
| Q |
16 |
ccttccactcttccctcctcctcaactgaatcaggtaaatttctttgctcctataatttgcaacaacggacatcggacacatgaatgtaactacatgtgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16271 |
ccttccactcttccctcctcctcaactgaatcaggtaaatttctttgctcctataatttgcaacagcggacatcggacacatgaatgtaactacatgtgt |
16172 |
T |
|
| Q |
116 |
gagtgtaggtagtgttagctgttggacactagacggtagaaacgccttgagtctcaagttacttttgatgcatatttgttgaaccagttgttaatattct |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16171 |
gagtgtaggtagtgttaggtgttggacactagacggtagacacgccttgagtctcaagttacttttgatgcatatttgttgaaccagttgttaacattct |
16072 |
T |
|
| Q |
216 |
tatttttatcatgatcatactttgaaagttcaatttcttaccattgaatttgaatcagttaaggtttgtaacattattgtccagattcatcnnnnnnnaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16071 |
tatttttatcatgatcatactttgaaagttcaatttcttaccattgaatttgaatcagttaaggtttgtaacattattgtccagattcatctttttttaa |
15972 |
T |
|
| Q |
316 |
gatacatgctgcctctactcctcttgtaagcagtgatgttgtgcatacaccatctgatcctggtggtggaatgggccactcgaggaactggttttcatat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15971 |
gatacatgctgcctctactcctcttgtaagcagtgatgttgtgcatacaccatctgatcctggcggtggaatgggccactcgaggaactggttttcatat |
15872 |
T |
|
| Q |
416 |
gaagagctaatcaaggcaacaaatggtttctcgactctgaatcttttgggagaaggtggatttggctctgtgtataaaggaattttacctgatgggagag |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15871 |
gaagagctaatcaaggcaacaaatggtttctcgactctgaatcttttgggagaaggtggatttggctctgtgtataaaggaattttacctgatgggagag |
15772 |
T |
|
| Q |
516 |
agatagcagtgaagcaactcaaaattggtggaagtcaaggggagagagaattcaaagctgaagttgacattattagtcgcatacatcatcgccatttggt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15771 |
agatagcagtgaagcaactcaaaattggtggaagtcaaggggagagagaattcaaagctgaagttgacattattagtcgcatacatcatcgccatttggt |
15672 |
T |
|
| Q |
616 |
ttcattagttggatactgcattcaagataacagaaaaatacttgtctatgactacgtccctaacaataccctttattttcatctacatggtaaatgtaac |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15671 |
ttcattagttggatactgcattcaagataacagaaaaatacttgtctatgactacgtccctaacaataccctttattttcatctacatggtaaatgtaac |
15572 |
T |
|
| Q |
716 |
tccttctcagttggtacattaacagattgtttcttacatgagat-ttttgaatagttttgattgtgttgtgttgattgaaatattggaatttgcagaaaa |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15571 |
tccttctcagttggtacattaacagattgtttcttacatgagattttttgaatagttttgattgtgttgtgttgaatgaaatattggaatttgcagaaaa |
15472 |
T |
|
| Q |
815 |
tggtcaacctgtactggaatgggaaaaacgtgttaaaatcgcagctggtgcagctcgaggaatagcttatcttcatgaagactgtaattaccaatcctca |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15471 |
tggtcaacctgtactggaatgggaaaaacgtgttaaaatcgcagctggtgcagctcgaggaatagcttatcttcatgaagactgtaattaccaatcctca |
15372 |
T |
|
| Q |
915 |
ttattttgttcttttctct |
933 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
15371 |
ttattttgttctttgctct |
15353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 2e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 594 - 878
Target Start/End: Original strand, 25027488 - 25027774
Alignment:
| Q |
594 |
gcatacatcatcgccatttggtttcattagttggatactgcattcaagataacagaaaaatacttgtctatgactacgtccctaacaataccctttattt |
693 |
Q |
| |
|
||||||||||| | |||| |||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| | |||| |||||||||||||||||| |
|
|
| T |
25027488 |
gcatacatcatgggcattcggtttctttagttggataatgcattcaagaaaacagaaaaatacttgtacatgaccatgtccttaacaataccctttattt |
25027587 |
T |
|
| Q |
694 |
tcatctacatggtaaatgta--actccttctcagttggtacattaacagattgtttcttacatgaga--tttttgaatagttttgattgtgttgtgttga |
789 |
Q |
| |
|
|||| |||| |||||| | ||| |||||||||||||||||||| |||||||||| ||||||||| ||||| | ||| ||||||||| ||| || | |
|
|
| T |
25027588 |
tcatttacactgtaaataaaacactacttctcagttggtacattaaaagattgtttcatacatgagattttttttagtagctttgattgtactgtcttaa |
25027687 |
T |
|
| Q |
790 |
ttgaaatattggaatttgcagaaaatggtcaacctgtactggaatgggaaaaacgtg-ttaaaatcgcagctggtgcagctcgaggaata |
878 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||| ||| ||||||| |||| || ||||||| ||||||| |||||||||||||||| |
|
|
| T |
25027688 |
atgaaatatcggaatttgcagca---ggtcaacctgtgctgaaatgggagaaacatgtttaaaatagcagctgctgcagctcgaggaata |
25027774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 443 - 544
Target Start/End: Original strand, 25027374 - 25027474
Alignment:
| Q |
443 |
ttctcgactctgaatcttttgggagaaggtggatttggctctgtgtataaaggaattttacctgatgggagagagatagcagtgaagcaactcaaaattg |
542 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| | ||||||||||||| |||||| |||||||||||||||||| |||||||| | ||||||||| |
|
|
| T |
25027374 |
ttctggactctgaatcttttgggagatggtggacgtatttctgtgtataaag-aatttttcctgatgggagagagataacagtgaagtaggtcaaaattg |
25027472 |
T |
|
| Q |
543 |
gt |
544 |
Q |
| |
|
|| |
|
|
| T |
25027473 |
gt |
25027474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University