View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_low_10 (Length: 323)
Name: NF13703_low_10
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 19140128 - 19140431
Alignment:
| Q |
8 |
ccaagaatattatatgatgttccgtactcactgtgcaagggtatttataaggaataaatgtggttttggctatcaagtcttcacttggataggtgtcccc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
19140128 |
ccaaaaatattatatgatgttccgtactcactgtgcaagggtatttataaggaatacgtgtggttttggctatcaagccttcacctggataggtgtcccc |
19140227 |
T |
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| Q |
108 |
gagggacaggtgttaccatttgaggggtagtttatcattggatttggactggaaagtcaggatctgttggtcccgaacattatccagtgggatttagga- |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
19140228 |
gagggacaggtgttaccatttgaggggtagtttatcattggatttggactggaaagtcaggatctgttggtcccgaacgttatccggtggaatttaggac |
19140327 |
T |
|
| Q |
207 |
----ctttgggtcccgaatcgggtttgggtctaactggattagatcgtatcccagtctagaacagtttcccccctaagctgtagagtgaaggagtcatac |
302 |
Q |
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||||||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19140328 |
ttgtctttgggtctcgagtcgggttcaggtctaactggattagatcgtatcacaatctagaacagtttcccccctaagctgtagagtgaaggagtcatac |
19140427 |
T |
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| Q |
303 |
ttct |
306 |
Q |
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|||| |
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| T |
19140428 |
ttct |
19140431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 20739527 - 20739830
Alignment:
| Q |
8 |
ccaagaatattatatgatgttccgtactcactgtgcaagggtatttataaggaataaatgtggttttggctatcaagtcttcacttggataggtgtcccc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
20739527 |
ccaaaaatattatatgatgttccgtactcactgtgcaagggtatttataaggaatacgtgtggttttggctatcaagccttcacctggataggtgtcccc |
20739626 |
T |
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| Q |
108 |
gagggacaggtgttaccatttgaggggtagtttatcattggatttggactggaaagtcaggatctgttggtcccgaacattatccagtgggatttagga- |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
20739627 |
gagggacaggtgttaccatttgaggggtagtttatcattggatttggactggaaagtcaggatctgttggtcccgaacgttatccggtggaatttaggac |
20739726 |
T |
|
| Q |
207 |
----ctttgggtcccgaatcgggtttgggtctaactggattagatcgtatcccagtctagaacagtttcccccctaagctgtagagtgaaggagtcatac |
302 |
Q |
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||||||||| ||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20739727 |
ttgtctttgggtctcgagtcgggttcaggtctaactggattagatcgtatcacaatctagaacagtttcccccctaagctgtagagtgaaggagtcatac |
20739826 |
T |
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| Q |
303 |
ttct |
306 |
Q |
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|||| |
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| T |
20739827 |
ttct |
20739830 |
T |
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