View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_low_11 (Length: 308)
Name: NF13703_low_11
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_11 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 37728022 - 37727722
Alignment:
| Q |
8 |
gaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagattttga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37728022 |
gaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagattttga |
37727923 |
T |
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| Q |
108 |
ttatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacgggatgagat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37727922 |
ttatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacaggatgagat |
37727823 |
T |
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| Q |
208 |
taaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagagtgcagctagttagagaagacgaaagaccagcatatgccttttttaat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
37727822 |
taaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagcgtgcagctagttagagaagatgaaagaccagcatgtgccttttttaat |
37727723 |
T |
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| Q |
308 |
a |
308 |
Q |
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| T |
37727722 |
a |
37727722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 33240589 - 33240290
Alignment:
| Q |
8 |
gaatggaaggtcacatgagcaatagaggttatgaaggtgcatcaacctttcgaattcctctgaaccaacaatggagacatggaggaaagtaagattttga |
107 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33240589 |
gaatggaaggtcacatgagcaatagaggttatgacggtgcatcaacctttcgaattcctttgaaccaacaatggagacatggaggaaagtaagattttga |
33240490 |
T |
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| Q |
108 |
ttatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacgggatgagat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33240489 |
ttatgggtgtctctgcgtgacttagttttgcaaaaaattacagatattgtgttgtgaagatttagatgataccagatctaaggtgttcacaagatgagat |
33240390 |
T |
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| Q |
208 |
taaaacatggaacaatttctagaaaaatggaacaaacaagagaaacccaagagtgcagctagttagagaagacgaaagaccagcatatgccttttttaat |
307 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33240389 |
taaaacatggaacaatttctagaaaaat-gaacaaacaagagaaacccaagcgtgcagctagttagagaagacgaaagaccagcatgtgccttttttaat |
33240291 |
T |
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