View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13703_low_14 (Length: 291)

Name: NF13703_low_14
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13703_low_14
NF13703_low_14
[»] chr3 (7 HSPs)
chr3 (16-287)||(6912446-6912720)
chr3 (160-287)||(19433938-19434065)
chr3 (168-283)||(9436973-9437088)
chr3 (149-284)||(28059410-28059545)
chr3 (149-284)||(28069835-28069970)
chr3 (149-284)||(5706660-5706793)
chr3 (148-198)||(29749870-29749920)
[»] chr4 (5 HSPs)
chr4 (16-207)||(4764664-4764855)
chr4 (166-287)||(27562260-27562382)
chr4 (153-280)||(18695285-18695416)
chr4 (163-287)||(54352928-54353050)
chr4 (225-287)||(4764603-4764666)
[»] chr2 (9 HSPs)
chr2 (16-261)||(4404870-4405118)
chr2 (149-287)||(39155761-39155900)
chr2 (150-287)||(15001821-15001958)
chr2 (144-280)||(809798-809936)
chr2 (149-284)||(2587156-2587291)
chr2 (153-283)||(10414810-10414940)
chr2 (149-283)||(31713209-31713343)
chr2 (149-198)||(44314820-44314869)
chr2 (149-198)||(44322999-44323048)
[»] chr1 (6 HSPs)
chr1 (144-287)||(47051647-47051790)
chr1 (149-287)||(17654485-17654622)
chr1 (210-281)||(16099746-16099817)
chr1 (153-283)||(29290138-29290268)
chr1 (149-281)||(14649210-14649342)
chr1 (149-281)||(14659000-14659132)
[»] scaffold0406 (1 HSPs)
scaffold0406 (149-287)||(2588-2728)
[»] chr8 (4 HSPs)
chr8 (144-287)||(4707601-4707743)
chr8 (152-243)||(15998609-15998700)
chr8 (166-283)||(18981360-18981477)
chr8 (162-224)||(26918449-26918511)
[»] scaffold0713 (2 HSPs)
scaffold0713 (149-287)||(4041-4178)
scaffold0713 (245-287)||(1-42)
[»] chr6 (9 HSPs)
chr6 (150-280)||(9821597-9821727)
chr6 (167-289)||(28039675-28039793)
chr6 (149-283)||(13142942-13143076)
chr6 (149-283)||(17354745-17354880)
chr6 (149-283)||(27683359-27683494)
chr6 (149-283)||(27690680-27690815)
chr6 (149-284)||(22012893-22013028)
chr6 (213-287)||(25479377-25479450)
chr6 (149-281)||(27526172-27526304)
[»] chr5 (3 HSPs)
chr5 (149-287)||(5520543-5520679)
chr5 (167-287)||(15597591-15597711)
chr5 (144-284)||(42784426-42784566)
[»] chr7 (6 HSPs)
chr7 (152-279)||(28802519-28802646)
chr7 (178-280)||(29469457-29469551)
chr7 (148-264)||(36265532-36265648)
chr7 (150-198)||(44061061-44061109)
chr7 (149-191)||(6023411-6023453)
chr7 (159-223)||(30943342-30943406)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 6912720 - 6912446
Alignment:
Q  16 agaagaatgttaatacttgaagattgaagcaaaataagagatttagaagctagtgtcgatgcacttagaaggctatgagaagggaactgttgctgtcttt 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6912720 agaagaatgttaatacttgaagattgaagcaaaaaaagagatttagaagctagtgtcgatgcacttagaaggctatgagaagggaactgttgctgtcttt 6912621  T
Q  116 tctgtacaataaggagttgttgcagcgcaattgagttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattg 215  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  6912620 tctgtacaataaggagttgttgcagcgcaattgagttgattcgtcataactgtgagttgataacgatcattatcgcatattttccctattaatattattg 6912521  T
Q  216 atattttgataattttccatgttaaagtgtttata----aaaatggggaacacgccctttgaacatttttcttctc 287  Q
    ||||||| ||||||||| |||||||||||||||||    |||||||||||||| |||||||||| |||||||||||    
T  6912520 atatttttataattttctatgttaaagtgtttataaaaaaaaatggggaacacaccctttgaac-tttttcttctc 6912446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 19433938 - 19434065
Alignment:
Q  160 cataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaaaatgggg 259  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||    
T  19433938 cataactgtgagttgataacgatcattatcacatatttttactattaatattattgatattttgataattttctatcttaaagtgtttataaaaatgggg 19434037  T
Q  260 aacacgccctttgaacatttttcttctc 287  Q
    |||| |||||||||||||||||||||||    
T  19434038 aacatgccctttgaacatttttcttctc 19434065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 9437088 - 9436973
Alignment:
Q  168 tgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaaaatggggaacacgcc 267  Q
    |||||||||  ||||||||||||| |||||||| ||| |  |||||||||| ||| || |||||  |||||||||| ||||  |||||  ||||||| ||    
T  9437088 tgagttgatggcgatcattatcacttattttcattatcattattattgataattttatgattttatatgttaaagtatttaccaaaatttggaacacacc 9436989  T
Q  268 ctttgaacatttttct 283  Q
    ||| ||| ||||||||    
T  9436988 cttcgaatatttttct 9436973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 284
Target Start/End: Complemental strand, 28059545 - 28059410
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || || | |||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||  |  ||||||| |||     
T  28059545 agttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataatttaaagtatttc 28059446  T
Q  249 taaaaatggggaacacgccctttgaacatttttctt 284  Q
    | |||| ||| | ||| |||||||||||||||||||    
T  28059445 tcaaaacgggaagcacaccctttgaacatttttctt 28059410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 284
Target Start/End: Complemental strand, 28069970 - 28069835
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || || | |||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||  |  ||||||| |||     
T  28069970 agttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataatttaaagtatttc 28069871  T
Q  249 taaaaatggggaacacgccctttgaacatttttctt 284  Q
    | |||| ||| | ||| |||||||||||||||||||    
T  28069870 tcaaaacgggaagcacaccctttgaacatttttctt 28069835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 284
Target Start/End: Complemental strand, 5706793 - 5706660
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || |||| |||||||||| |||||   |||||| |||||| | |||    ||||||||||||||| | |||||  | |||||||| ||||    
T  5706793 agttgattcgtcgtaacagtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttattttataagttaaagtattta 5706697  T
Q  249 taaaaa-tggggaacacgccctttgaacatttttctt 284  Q
    |||||| |||||||||| |||||| || |||||||||    
T  5706696 taaaaaatggggaacacaccctttcaatatttttctt 5706660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 29749920 - 29749870
Alignment:
Q  148 gagttgattcatcataactgtgagttgataacgatcattatcacatatttt 198  Q
    ||||||||||||||||| |||||||||||  |||||||||||| |||||||    
T  29749920 gagttgattcatcataattgtgagttgatggcgatcattatcatatatttt 29749870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 4764855 - 4764664
Alignment:
Q  16 agaagaatgttaatacttgaagattgaagcaaaataagagatttagaagctagtgtcgatgcacttagaaggctatgagaagggaactgttgctgtcttt 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4764855 agaagaatgttaatacttgaagattgaggcaaaataagagatttagaagctagtgtcgatgcacttagaaggctatgagaagggaactgttgctgtcttt 4764756  T
Q  116 tctgtacaataaggagttgttgcagcgcaattgagttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  4764755 tctgtacaataaggagttgttgcagcgcaattgagttgattcatcataactgtgagttgataacgatcattatcgcatattttccctattaa 4764664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 27562382 - 27562260
Alignment:
Q  166 tgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttata-aaaatggggaacac 264  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  27562382 tgtgagttgataacgatcattatcacatattttcactattaatattattgatattttgataattttctatgttaaagtgtttataaaaaatggggaacac 27562283  T
Q  265 gccctttgaacatttttcttctc 287  Q
    |||||||||||||||||||||||    
T  27562282 gccctttgaacatttttcttctc 27562260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 18695416 - 18695285
Alignment:
Q  153 gattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttata-- 250  Q
    ||||| ||||| | ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||      
T  18695416 gattcgtcatatcggtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataattttctatgttaaagtgtttataaa 18695317  T
Q  251 --aaaatggggaacacgccctttgaacatttt 280  Q
      |||||||||||||| |||||||||| ||||    
T  18695316 aaaaaatggggaacacaccctttgaacttttt 18695285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 163 - 287
Target Start/End: Complemental strand, 54353050 - 54352928
Alignment:
Q  163 aactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaaaatggggaac 262  Q
    |||||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||| |||||||||||||||||||||||||||||    
T  54353050 aactgtgagttgatgacgatcattatcacttattttaattatagctattattgatattttggtgattttctatgttaaagtgtttataaaaatggggaac 54352951  T
Q  263 acgccctttgaacatttttcttctc 287  Q
    |  ||||||||||||||||||||||    
T  54352950 a--ccctttgaacatttttcttctc 54352928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 4764666 - 4764603
Alignment:
Q  225 taattttccatgttaaagtgtttata--aaaatggggaacacgccctttgaacatttttcttctc 287  Q
    |||||||| |||||||||||||||||  |||||||||||||| |||||||||| |||||||||||    
T  4764666 taattttctatgttaaagtgtttataaaaaaatggggaacacaccctttgaac-tttttcttctc 4764603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 4404870 - 4405118
Alignment:
Q  16 agaagaatgttaatacttgaagattgaagcaaaataagagatttagaagctagtgtcgatgcacttagaaggctatgagaagggaactgttgctgtcttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4404870 agaagaatgttaatacttgaagattgaagcaaaataagagatttagaagctagtgtcgatgcacttagaaggctatgagaagggaactgttgctgtcttt 4404969  T
Q  116 tctgtacaataaggagttgttgcagcgcaattgagttgattcatcataactgtgagttgataacgatcattatcacatattt---tcactattaaaatta 212  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||   | || ||||  ||||    
T  4404970 tatgtacaataaggagttgttgcagcgcaattgagttgattcatcataactgtgagttgataacgatcattatcgcttattttaattacaattattatta 4405069  T
Q  213 ttgatattttgataattttccatgttaaagtgtttataaaaatggggaa 261  Q
    ||| ||||||||| | |||| |||| ||||| ||||  |||||||||||    
T  4405070 ttggtattttgattaatttctatgtcaaagtatttactaaaatggggaa 4405118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 149 - 287
Target Start/End: Complemental strand, 39155900 - 39155761
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  39155900 agttgattcatcgtaactgtgagttgataacgatcattatcacatattttcactattaatattattgatattttgataattttctatgttaaagtgttta 39155801  T
Q  249 ta-aaaatggggaacacgccctttgaacatttttcttctc 287  Q
    || |||||||||||||||||||||||||||||||||||||    
T  39155800 taaaaaatggggaacacgccctttgaacatttttcttctc 39155761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 150 - 287
Target Start/End: Complemental strand, 15001958 - 15001821
Alignment:
Q  150 gttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttat 249  Q
    ||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  15001958 gttgattcgccattactatgagttgataacgatcattatcacatattttcactattaatattattgatattttgataattttctatgttaaagtgtttat 15001859  T
Q  250 aaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    ||||||||||||||| |||||||| | |||||||||||    
T  15001858 aaaaatggggaacacaccctttgagcttttttcttctc 15001821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 280
Target Start/End: Complemental strand, 809936 - 809798
Alignment:
Q  144 aattgagttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagt 243  Q
    |||||||||  ||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  809936 aattgagttctttcgtcatatctgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataattttctatgttaaagt 809837  T
Q  244 gtttata--aaaatggggaacacgccctttgaacatttt 280  Q
    |||||||  |||||||||||||| |||||||||| ||||    
T  809836 gtttataaaaaaatggggaacacaccctttgaacttttt 809798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 284
Target Start/End: Original strand, 2587156 - 2587291
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| |||||||||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||  | |||||||| |||     
T  2587156 agttgattcgtcataactgtgagttgatgacgatcattatcacttattttaattatctctattattgatattttggtgattttataagttaaagtatttc 2587255  T
Q  249 taaaaatggggaacacgccctttgaacatttttctt 284  Q
    | |||| ||| | ||| |||||||||||||||||||    
T  2587256 tcaaaacgggaagcacaccctttgaacatttttctt 2587291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 283
Target Start/End: Original strand, 10414810 - 10414940
Alignment:
Q  153 gattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaa 252  Q
    ||||| |||||||||||||||||| |||||||||||| | |||||||| |||    ||||||| |||||| || |||||  |||||||||| ||||| ||    
T  10414810 gattcgtcataactgtgagttgatgacgatcattatcgcttattttcaatatcgttattattgctatttttatgattttatatgttaaagtatttatcaa 10414909  T
Q  253 aatggggaacacgccctttgaacatttttct 283  Q
    | |||||||| | || |||||||||||||||    
T  10414910 attggggaacgcaccttttgaacatttttct 10414940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 31713209 - 31713343
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgtt-aaagtgttt 247  Q
    |||||||||||| ||||||||||||| | |||||||||||| | |||||||| |||    |||||||||||||| || |||||  ||||| ||||| | |    
T  31713209 agttgattcatcgtaactgtgagttggtgacgatcattatcgcttattttcaatatcgttattattgatatttt-atgattttatatgttaaaagtatct 31713307  T
Q  248 ataaaaatggggaacacgccctttgaacatttttct 283  Q
    | ||||||||||||||| ||||| ||| ||||||||    
T  31713308 acaaaaatggggaacacacccttcgaatatttttct 31713343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 44314820 - 44314869
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatatttt 198  Q
    ||||||||| || ||||||||||||||| |||||||||||||| ||||||    
T  44314820 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttatttt 44314869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 44322999 - 44323048
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatatttt 198  Q
    ||||||||| || ||||||||||||||| |||||||||||||| ||||||    
T  44322999 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttatttt 44323048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 47051790 - 47051647
Alignment:
Q  144 aattgagttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagt 243  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  47051790 aattgagttctttcgtcatatctgtgagttgataacgatcattatcatatattttcactattaatattattgatattttgataattttctatgttaaagt 47051691  T
Q  244 gtttataaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    ||||   |||||||||||||| ||||||||||||||||||||||    
T  47051690 gttttataaaatggggaacacaccctttgaacatttttcttctc 47051647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 149 - 287
Target Start/End: Complemental strand, 17654622 - 17654485
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  17654622 agttgattcgtcgtaactgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataattttctatgttaaagttttta 17654523  T
Q  249 taaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  17654522 taaaaatggggaacacaccctttgaac-tttttcttctc 17654485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 16099746 - 16099817
Alignment:
Q  210 ttattgatattttgataattttccatgttaaagtgtttataaaaatggggaacacgccctttgaacattttt 281  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16099746 ttattgatattttgataattttctatgttaaagtgtttataaaaatggggaacacaccctttgaacattttt 16099817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 29290268 - 29290138
Alignment:
Q  153 gattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaa 252  Q
    ||||| |||||||||||||||||| |||||||||||| | |||||||| |||    ||||||| |||||| || |||||  || ||||||| ||||| ||    
T  29290268 gattcgtcataactgtgagttgatgacgatcattatcgcttattttcaatatcgttattattgctatttttatgattttatattttaaagtatttatcaa 29290169  T
Q  253 aatggggaacacgccctttgaacatttttct 283  Q
    | |||||||||| || |||||||||||||||    
T  29290168 attggggaacacaccttttgaacatttttct 29290138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 14649210 - 14649342
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || ||||||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||  | |||||||| |||     
T  14649210 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttc 14649309  T
Q  249 taaaaatggggaacacgccctttgaacattttt 281  Q
    | |||||||| | ||| ||||||||||||||||    
T  14649310 tcaaaatgggaagcacaccctttgaacattttt 14649342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 14659000 - 14659132
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || ||||||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||  | |||||||| |||     
T  14659000 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttc 14659099  T
Q  249 taaaaatggggaacacgccctttgaacattttt 281  Q
    | |||||||| | ||| ||||||||||||||||    
T  14659100 tcaaaatgggaagcacaccctttgaacattttt 14659132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 149 - 287
Target Start/End: Original strand, 2588 - 2728
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2588 agttgattcgtcataactgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataattttctatgttaaagtgttta 2687  T
Q  249 t---aaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    |   ||||||||||||||| |||||||||| |||||||||||    
T  2688 taaaaaaaatggggaacacaccctttgaac-tttttcttctc 2728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 144 - 287
Target Start/End: Complemental strand, 4707743 - 4707601
Alignment:
Q  144 aattgagttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagt 243  Q
    |||||||||  ||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  4707743 aattgagttctttcgtcatatctgtgagttgataacgatcattatcgcatattttccctattaatattattgatactttgataattttctatgttaaagt 4707644  T
Q  244 gtttataaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    ||||||||||||||||||||| |||||||||| |||||||||||    
T  4707643 gtttataaaaatggggaacacaccctttgaac-tttttcttctc 4707601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 243
Target Start/End: Original strand, 15998609 - 15998700
Alignment:
Q  152 tgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagt 243  Q
    |||||| |||||||  |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||| |||||    
T  15998609 tgattcgtcataacactgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataattttctatgtaaaagt 15998700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 283
Target Start/End: Original strand, 18981360 - 18981477
Alignment:
Q  166 tgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaaaatggggaacacg 265  Q
    ||||||||||| | |||||||||||| |||||| | |||    ||||||||||||||| | |||||  | |||||||| ||| | |||| ||| | |||     
T  18981360 tgtgagttgatgatgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagtatttctcaaaacgggaagcaca 18981459  T
Q  266 ccctttgaacatttttct 283  Q
    ||||||||||||||||||    
T  18981460 ccctttgaacatttttct 18981477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 26918511 - 26918449
Alignment:
Q  162 taactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttga 224  Q
    ||||||||||||||| |||||||||||||  |||||| | ||| |  ||||||||||||||||    
T  26918511 taactgtgagttgatgacgatcattatcaattattttaattatcattattattgatattttga 26918449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 149 - 287
Target Start/End: Original strand, 4041 - 4178
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || ||||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||    
T  4041 agttgattcgtcgtaactatgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataattttctatgttaaagttttta 4140  T
Q  249 taaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  4141 taaaaatggggaacacaccctttgaac-tttttcttctc 4178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 1 - 42
Alignment:
Q  245 tttataaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  1 tttataaaaatggggaacacaccctttgaac-tttttcttctc 42  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 9821597 - 9821727
Alignment:
Q  150 gttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttat 249  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||  ||||||||||||||||    
T  9821597 gttgattcgccataactgtgagttgataacgatcattatcgcatattttccctattaatattattgatattttgataattttatatgttaaagtgtttat 9821696  T
Q  250 aaaaatggggaacacgccctttgaacatttt 280  Q
    ||||||||||||||| |||||||||| ||||    
T  9821697 aaaaatggggaacacaccctttgaacttttt 9821727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 167 - 289
Target Start/End: Original strand, 28039675 - 28039793
Alignment:
Q  167 gtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaaaatggggaacacgc 266  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||   |||||| |||||||||||||||||||||||| ||||||      
T  28039675 gtgagttgataacgatcattatcacatatttttactattaatattattgatattttg---attttctatgttaaagtgtttataaaaatggagaacac-a 28039770  T
Q  267 cctttgaacatttttcttctcct 289  Q
     ||||||||||||||||| ||||    
T  28039771 gctttgaacatttttcttgtcct 28039793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 283
Target Start/End: Complemental strand, 13143076 - 13142942
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || |||| |||||||||| |||||||||||| | |||||||| |||    |||||||||||||| || |||||  |||||||||| ||||    
T  13143076 agttgattcgtcgtaacagtgagttgatgacgatcattatcgcttattttcaatatcgttattattgatatttttatgattttatatgttaaagtattta 13142977  T
Q  249 taaaaatggggaacacgccctttgaacatttttct 283  Q
     |||||| |||||||| ||||| ||| ||||||||    
T  13142976 caaaaatagggaacacacccttcgaatatttttct 13142942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 17354745 - 17354880
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgtt-aaagtgttt 247  Q
    ||||||||| || ||||||||||||||| |||||||||||  | |||||||| |||    |||||||||||||| || |||||  ||||| ||||| |||    
T  17354745 agttgattcttcgtaactgtgagttgattacgatcattattgcttattttcaatatcgttattattgatatttttatgattttatatgttaaaagtattt 17354844  T
Q  248 ataaaaatggggaacacgccctttgaacatttttct 283  Q
    | ||||||||||||||| ||||| ||| ||||||||    
T  17354845 acaaaaatggggaacacacccttcgaatatttttct 17354880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 27683359 - 27683494
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgtt-aaagtgttt 247  Q
    |||||||||||| |||| |||||||||| |||||||||||  | |||||||| |||    |||||||||||||| || |||||  ||||| ||||| |||    
T  27683359 agttgattcatcgtaacagtgagttgatgacgatcattattgcttattttcaatatcgttattattgatatttttatgattttatatgttaaaagtattt 27683458  T
Q  248 ataaaaatggggaacacgccctttgaacatttttct 283  Q
    | ||||||||||||||| ||||| ||| ||||||||    
T  27683459 acaaaaatggggaacacacccttcgaatatttttct 27683494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 27690680 - 27690815
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgtt-aaagtgttt 247  Q
    |||||||||||| |||| |||||||||| |||||||||||  | |||||||| |||    |||||||||||||| || |||||  ||||| ||||| |||    
T  27690680 agttgattcatcgtaacagtgagttgatgacgatcattattgcttattttcaatatcgttattattgatatttttatgattttatatgttaaaagtattt 27690779  T
Q  248 ataaaaatggggaacacgccctttgaacatttttct 283  Q
    | ||||||||||||||| ||||| ||| ||||||||    
T  27690780 acaaaaatggggaacacacccttcgaatatttttct 27690815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 284
Target Start/End: Original strand, 22012893 - 22013028
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||| || ||||||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||  | |||||  | |||||||| |||     
T  22012893 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatatttttgtgattttataagttaaagtatttc 22012992  T
Q  249 taaaaatggggaacacgccctttgaacatttttctt 284  Q
    | |||| ||| | ||| |||||||||||||||||||    
T  22012993 tcaaaacgggaagcacaccctttgaacatttttctt 22013028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 25479450 - 25479377
Alignment:
Q  213 ttgatattttgataattttccatgttaaagtgtttat-aaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||| |||||| |||||||||||    
T  25479450 ttgatattttgataattttctatgttaaa-tgtttataaaaaatggggaacacacccattgaac-tttttcttctc 25479377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 281
Target Start/End: Original strand, 27526172 - 27526304
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    ||||||||  || ||||||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| |||||||  | |||||||| |||     
T  27526172 agttgatttgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtaattttataagttaaagtatttc 27526271  T
Q  249 taaaaatggggaacacgccctttgaacattttt 281  Q
    | |||| ||| | ||| || ||| |||||||||    
T  27526272 tcaaaacgggaagcacaccttttaaacattttt 27526304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 149 - 287
Target Start/End: Complemental strand, 5520679 - 5520543
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttta 248  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||  |||||||||||||||    
T  5520679 agttgattcatcataactgtgagttgatgacgatcattatcacttattttaattatagctattattgatattttggtgattttgtatgttaaagtgttta 5520580  T
Q  249 taaaaatggggaacacgccctttgaacatttttcttctc 287  Q
    |||||||||||||||  ||||||||||||||||| ||||    
T  5520579 taaaaatggggaaca--ccctttgaacatttttcctctc 5520543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 167 - 287
Target Start/End: Original strand, 15597591 - 15597711
Alignment:
Q  167 gtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaaaatggggaacacgc 266  Q
    |||||||||| |||||||||||||| |||||||| |||    |||||| ||||||| || |||||  |||||||||| |||||||||||||||||||| |    
T  15597591 gtgagttgatgacgatcattatcacttattttcattatctttattattaatatttttatgattttatatgttaaagtatttataaaaatggggaacacac 15597690  T
Q  267 cctttgaacatttttcttctc 287  Q
    |||||||| ||||||| ||||    
T  15597691 cctttgaagatttttcctctc 15597711  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 284
Target Start/End: Original strand, 42784426 - 42784566
Alignment:
Q  144 aattgagttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagt 243  Q
    |||||||||  ||| ||||| |||||||||||| |||||||||||||| |||||| | |||    ||||||||||||||| | |||||  | ||||||||    
T  42784426 aattgagttctttcgtcatatctgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgattttataagttaaagt 42784525  T
Q  244 gtttataaaaatggggaacacgccctttgaacatttttctt 284  Q
     ||| | |||| ||| | ||| |||||||||||||||||||    
T  42784526 atttctcaaaacgggaagcacaccctttgaacatttttctt 42784566  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 28802519 - 28802646
Alignment:
Q  152 tgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataa 251  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||||| |||    |||||||||||||| || |||||  ||||||||||||||||||    
T  28802519 tgattcgtcataacagtgagttgatgacgatcattatcacatattttcattatcgttattattgatatttttatgattttatatgttaaagtgtttataa 28802618  T
Q  252 aaatggggaacacgccctttgaacattt 279  Q
    ||||||||||||| | ||||||||||||    
T  28802619 aaatggggaacacactctttgaacattt 28802646  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 280
Target Start/End: Complemental strand, 29469551 - 29469457
Alignment:
Q  178 acgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgtttataaaaatggggaacacgccctttgaacat 277  Q
    |||||||||||||||||| ||||||||||| |||||||||         |||||| ||||||||||||||||||||||||||||||| |||||| || ||    
T  29469551 acgatcattatcacatatcttcactattaatattattgatt--------attttctatgttaaagtgtttataaaaatggggaacacaccctttcaatat 29469460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 36265648 - 36265532
Alignment:
Q  148 gagttgattcatcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttgataattttccatgttaaagtgttt 247  Q
    ||||||| || |||||  ||||||||||| | |||||||||||| |||||||  |||    |||||||||||||| || |||||  |||||||||| |||    
T  36265648 gagttgactcgtcatagttgtgagttgatgaggatcattatcacttattttccttatcgttattattgatatttttatgattttatatgttaaagtattt 36265549  T
Q  248 ataaaaatggggaacac 264  Q
    | |||||||||| ||||    
T  36265548 acaaaaatgggggacac 36265532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 44061109 - 44061061
Alignment:
Q  150 gttgattcatcataactgtgagttgataacgatcattatcacatatttt 198  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  44061109 gttgattcatcataactgtgagttgataacgatcactatcgcttatttt 44061061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Complemental strand, 6023453 - 6023411
Alignment:
Q  149 agttgattcatcataactgtgagttgataacgatcattatcac 191  Q
    ||||||||| || ||||||||||||||| ||||||||||||||    
T  6023453 agttgattcgtcgtaactgtgagttgatgacgatcattatcac 6023411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 30943342 - 30943406
Alignment:
Q  159 tcataactgtgagttgataacgatcattatcacatattttcactattaaaattattgatattttg 223  Q
    |||||| | |||||||||||| |||||||||| ||||||| | ||||   |||||||||||||||    
T  30943342 tcataattatgagttgataacaatcattatcatatattttaattattgttattattgatattttg 30943406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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