View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_low_19 (Length: 248)
Name: NF13703_low_19
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7293893 - 7293653
Alignment:
| Q |
1 |
acttagagtttagcttttcaatccaaca---tatcaatgattgcattgaaaataattggtaatttgtaatgtctcgcgccgtgctaaacattttcttttt |
97 |
Q |
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| T |
7293893 |
acttagagtttagcttttcaatccaacaacatatcaatgattgcattgaaaataattggtaatttgtaatgtctcgcgccgtgctaaacattttcttttt |
7293794 |
T |
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| Q |
98 |
atgtcattatagggaaagggaatttctataacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattg |
197 |
Q |
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| T |
7293793 |
atgtcattatagggaaagggaatttctttaacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattg |
7293694 |
T |
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| Q |
198 |
cagatctgggttgttcttgtggacaaaacactttgtctgtg |
238 |
Q |
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| T |
7293693 |
cagatctgggttgttcttgtggacaaaacactttgtctgtg |
7293653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 7298228 - 7298127
Alignment:
| Q |
137 |
ataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgtctg |
236 |
Q |
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| T |
7298228 |
ataagagatgaagccataacaagcctctactccaaaacacttttcaaaagccttgcaattgcagatttaggttgttcttctggaccaaacactttgtttg |
7298129 |
T |
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| Q |
237 |
tg |
238 |
Q |
| |
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|| |
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| T |
7298128 |
tg |
7298127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 32704261 - 32704201
Alignment:
| Q |
173 |
acacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacactttgt |
233 |
Q |
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| T |
32704261 |
acactccccataagcttggcaattgcagatttgggttgctcttatggaccaaacactttgt |
32704201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 5811711 - 5811620
Alignment:
| Q |
140 |
agagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtggacaaaacacttt |
231 |
Q |
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| T |
5811711 |
agagacgaagctataaccagtctatactgcaacacacttcctagaagcttggcaattgcagacttgggttgctcttttggaccaaacacttt |
5811620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 27737051 - 27736941
Alignment:
| Q |
119 |
atttctataacaaaacatataagagaggaagccataactagcctctactccagcacacttcccagaagccttgcaattgcagatctgggttgttcttgtg |
218 |
Q |
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|||||| ||||||||| | | ||||| ||||| ||||| | ||| || | || |||||||||||||||| | ||||||||||| ||||||| |||| || |
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| T |
27737051 |
atttctttaacaaaacctttgagagacgaagctataaccaacctatattgcaacacacttcccagaagcttggcaattgcagacttgggttgctcttttg |
27736952 |
T |
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| Q |
219 |
gacaaaacact |
229 |
Q |
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| | ||||||| |
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| T |
27736951 |
ggccaaacact |
27736941 |
T |
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