View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_low_2 (Length: 592)
Name: NF13703_low_2
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Original strand, 29654385 - 29654860
Alignment:
| Q |
16 |
cagcaatatataaagaaataattaacaaaaaattaagtaaacttttaatctatttaagatagtaaaaacaaaga------aaacatatacgtacacttta |
109 |
Q |
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| T |
29654385 |
cagcaatatataaagaaataattaacaaaaaattaaataaacttttaatctatttaagatagtaaaaacaaataggagtaaaacatatacgtacacttta |
29654484 |
T |
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| Q |
110 |
taacagtaatatttggtacaatgcgcttgttaattgacagctaaaagactctgcaatagcattgaagttcatttactttttacccaaccacccaactgta |
209 |
Q |
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| T |
29654485 |
taacagtaatatttggtacaatgtgcttgttaattgacagctaaaagactctgcaatagcattgaagttcatttactttttacccaaccacccaactgta |
29654584 |
T |
|
| Q |
210 |
tccttttttctcctttttaaaaggagaaccctctacgttgtttttgaacatactatcaactttaagtttagaaatagtgaga-gnnnnnnnnnggtgtag |
308 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
29654585 |
tcctcttttctcctttttaaaaggagaaccctctacgttgtttttgaacatactatcaactttaagtttagaaatagtgagaggaaaaaaaaaggtgtag |
29654684 |
T |
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| Q |
309 |
agagaaatggctaagtggtgcattttggtggttttggctcttgctgtggttgcaacaaatgcaagaaatgtgcctgctggagaagatggtttgaaggatc |
408 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29654685 |
agagaaatggctaagtggtgcattttggtgtttttggctcttgctgtggttgcaacaaatgcaagaaatgtgcctgctggagaagatggtttgaaggatc |
29654784 |
T |
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| Q |
409 |
agaagaattacatgactggagctggtgttttttcaggcattggtaacaatggactgccttttggaggtgtaggctt |
484 |
Q |
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| T |
29654785 |
agaagaattacatgactggagctggtgttttttcaggcattggtaacaatggactgccttttggaggtgtaggctt |
29654860 |
T |
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