View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13703_low_22 (Length: 239)

Name: NF13703_low_22
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13703_low_22
NF13703_low_22
[»] chr6 (2 HSPs)
chr6 (19-235)||(17433448-17433664)
chr6 (90-235)||(17454527-17454672)
[»] chr4 (8 HSPs)
chr4 (86-229)||(38242951-38243094)
chr4 (92-229)||(38226437-38226574)
chr4 (92-229)||(38237976-38238113)
chr4 (106-229)||(38220096-38220219)
chr4 (98-229)||(38253304-38253435)
chr4 (98-215)||(38248165-38248281)
chr4 (94-224)||(38214063-38214192)
chr4 (27-66)||(37306525-37306564)
[»] chr5 (1 HSPs)
chr5 (28-79)||(40699487-40699538)
[»] chr7 (2 HSPs)
chr7 (27-79)||(22159085-22159137)
chr7 (27-79)||(22217793-22217845)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 17433664 - 17433448
Alignment:
Q  19 tcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttctttcgtagggtattatagtgagcaacgtggatttctttgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  17433664 tcacatagatttcacctaataagaaagtgattgttagaaagaaagcgttcctaacatttctttcgttgggtattatagtgagcaacatggatttctttgt 17433565  T
Q  119 ttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17433564 ttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtgg 17433465  T
Q  219 atatgtgatctgtgctg 235  Q
    ||||||||||| |||||    
T  17433464 atatgtgatctatgctg 17433448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 17454672 - 17454527
Alignment:
Q  90 attatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaag 189  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  17454672 attatagtgagcaacatgaatttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatgaggagggaaatggttgtgttcatgtgaag 17454573  T
Q  190 aggacaagtctcccactacaaactggtggatatgtgatctgtgctg 235  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||||    
T  17454572 aggacaagtctcccactgcaaactggtggctatgtgatctatgctg 17454527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 86 - 229
Target Start/End: Complemental strand, 38243094 - 38242951
Alignment:
Q  86 gggtattatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgt 185  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||| |||||||||||    
T  38243094 gggtatcatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatagggaggaaaatgggtgtgttcatgt 38242995  T
Q  186 gaagaggacaagtctcccactacaaactggtggatatgtgatct 229  Q
    ||||||||||||||||||| | ||||||||||||||||||||||    
T  38242994 gaagaggacaagtctcccatttcaaactggtggatatgtgatct 38242951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 38226574 - 38226437
Alignment:
Q  92 tatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagag 191  Q
    ||||||||||||| || |||| ||||||||||| |||||||||||||||||||||| ||| ||||||| | ||   ||||||||||||| ||||||||||    
T  38226574 tatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagag 38226475  T
Q  192 gacaagtctcccactacaaactggtggatatgtgatct 229  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  38226474 gacaagtctcccactacaaactggtggctatgtgatct 38226437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 38238113 - 38237976
Alignment:
Q  92 tatagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagag 191  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||   |||||||||||||||||    
T  38238113 tatagtgagcaacatggttttctttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaattcctgtgttcatgtgaagag 38238014  T
Q  192 gacaagtctcccactacaaactggtggatatgtgatct 229  Q
    ||||||||||||| | ||||||||||| ||| ||||||    
T  38238013 gacaagtctcccatttcaaactggtggctatatgatct 38237976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 229
Target Start/End: Complemental strand, 38220219 - 38220096
Alignment:
Q  106 tggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccac 205  Q
    |||||||||||||||||| ||||||||||||||||||| |||| || | ||||| |||| | |||||||||||||||||||||||||| ||||||||||     
T  38220219 tggatttctttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccat 38220120  T
Q  206 tacaaactggtggatatgtgatct 229  Q
    | ||||||||||| ||||||||||    
T  38220119 ttcaaactggtggttatgtgatct 38220096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 38253435 - 38253304
Alignment:
Q  98 gagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaag 197  Q
    ||||||| | |||||||||||||||| |||||||| ||||| |||||||||||| ||| ||  |||||| |||||| ||||||||||| || ||||||||    
T  38253435 gagcaacatagatttctttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaag 38253336  T
Q  198 tctcccactacaaactggtggatatgtgatct 229  Q
    ||||||||||||||| ||||| ||||||||||    
T  38253335 tctcccactacaaaccggtggctatgtgatct 38253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 38248281 - 38248165
Alignment:
Q  98 gagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaag 197  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||| ||  |||||| |||||| |||||||||||||| ||||||||    
T  38248281 gagcaacgtagatttctttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaag 38248183  T
Q  198 tctcccactacaaactgg 215  Q
    ||||||||||||| ||||    
T  38248182 tctcccactacaatctgg 38248165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 38214192 - 38214063
Alignment:
Q  94 tagtgagcaacgtggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagagga 193  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||||||||| | || ||| ||| |   |  |||||||||||||||||||| |||||    
T  38214192 tagtgagcaacatggattt-tttgtttcaggttgagtatcaagttgaatcttgtaccacagatcataatttgagaaatggttgtgttcatgtgatgagga 38214094  T
Q  194 caagtctcccactacaaactggtggatatgt 224  Q
    ||||||||||||||||||||||||| |||||    
T  38214093 caagtctcccactacaaactggtggctatgt 38214063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 37306525 - 37306564
Alignment:
Q  27 atttcacctaataagaaagtgattgttagaaagaaagtgt 66  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  37306525 atttcacccaataagaaagtgagtgttagaaagaaagtgt 37306564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 40699538 - 40699487
Alignment:
Q  28 tttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 79  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||| |||||||    
T  40699538 tttcacccaataagaaagtgagtgttagaaagagagtgttcctagcatttct 40699487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 22159085 - 22159137
Alignment:
Q  27 atttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 79  Q
    |||||| | ||||| | ||||| ||||||||||| ||||||||||||||||||    
T  22159085 atttcaaccaataaaagagtgagtgttagaaagatagtgttcctaacatttct 22159137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 22217793 - 22217845
Alignment:
Q  27 atttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 79  Q
    |||||| | ||||| | ||||| ||||||||||| ||||||||||||||||||    
T  22217793 atttcaaccaataaaagagtgagtgttagaaagatagtgttcctaacatttct 22217845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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