View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_low_25 (Length: 212)
Name: NF13703_low_25
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 34594479 - 34594281
Alignment:
| Q |
1 |
ccgaaagaaatgggtcagaagcagaagcacgctttgaaatcagatcccaacgatgaaaccaagaagaaacgccgtgttggattttccggcataggcgagt |
100 |
Q |
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| T |
34594479 |
ccgaaagaaatgggtcagaagcagaagcacgctttgaaatcagatcccaacgatgaaaccaagaagaaacgccgtgttggattttccggcataggcgagt |
34594380 |
T |
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| Q |
101 |
tttctttatatttttactca-nnnnnnnngaatttgtttcgtcattttgctgtgatttatacgata-ttttcattgcgttttgtagatgctggagttga |
197 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
34594379 |
tttctttatatttttactcattttttgttgaatttgtttcgtcattttgctgtgatttatacgatatttttcattgcgttttgtagatgctggggttga |
34594281 |
T |
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