View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13703_low_4 (Length: 433)
Name: NF13703_low_4
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 5243168 - 5242913
Alignment:
| Q |
8 |
tgaaatgaagagttttgttattgtgcttaaattgagcagcaacatctccagaagagagtcctctactcttcaataatgttgagttcaaatcctgaaatta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243168 |
tgaaatgaagagttttgttattgtgcttaaattgagcagcaacatctccagaagagagtcctctactcttcaataatgttgagttcaaatcctgaaatta |
5243069 |
T |
|
| Q |
108 |
tgattagcaataataatcatgaattaattactgataaacttgtggtaaataaggaatatgaatagaaagtaattacttacaagaccggagttggtggagg |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5243068 |
tgattaacaataataatcatgaattaattactgataaacttgtggtaaataaggaatatgaatagaaagtaattacttacaagaccggagttggtggagg |
5242969 |
T |
|
| Q |
208 |
aggagatagtgagtttttgatcggagttgtaatcttttgtgagaatatctgcgacg |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5242968 |
aggagatagtgagtttttgatcggagttgtaatcttttgtgagaatatctgcgacg |
5242913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 330 - 417
Target Start/End: Complemental strand, 5242845 - 5242758
Alignment:
| Q |
330 |
gtgtgagaatgaaaaagagtgagtgttacctctggattttttgccgatatcggagaagaggccaggtcctttggaagacattgttgtt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5242845 |
gtgtgagaatgaaaaagagtgagtgttacctctggattttttgccgatatcggagaagaggccaggtcctttggaagacattgttgtt |
5242758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University