View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13703_low_5 (Length: 405)
Name: NF13703_low_5
Description: NF13703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13703_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 39937716 - 39937328
Alignment:
| Q |
1 |
tatcaaaatcattaaaacacagaataataaactaaccaaatcctgcaaaatactaagataaggcaatttacctgactggcggggttctgggtttttaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | |||| |
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| T |
39937716 |
tatcaaaatcattaaaacacagaataataaactaaccaaatcctgcaaaatactaagataaggcaatttacctgactggcgggtttctggtttctcaaga |
39937617 |
T |
|
| Q |
101 |
agcctgctgacatttggttggttcattgcttgattctacacatggtaacggacttcttcaatgtttacgtcgtttgattgtttttattgaaagaacnnnn |
200 |
Q |
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| T |
39937616 |
ggcctgctgacatttggttggttcattgcttgattctacacatggtaacggacttcttaaatgtttacgtcgtttgattgtttttattgaaagaacaaaa |
39937517 |
T |
|
| Q |
201 |
nnngaaacttcgaacgtttgcaaaaatgaagttttactaccagttgagttaaatgtaaaataccaatttatatataacataaattttttgattgatctgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39937516 |
aaagaaacttcgaacgtttgcaaaaatgaagttttactaccagttgagttaaatgtaaaataccaatttatatataacataaattttttgattgatctgt |
39937417 |
T |
|
| Q |
301 |
ttttaaaatgcaaagtaaaacagcacacacattattaccatagtaaaataatatatgtggtggtggcaggatatccaatggatctcatg |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39937416 |
ttttaaaatgcaaagtaaaacagcacacacattattaccatagtaaaataatatatgtggtggtggcaggatatccaatggatctcatg |
39937328 |
T |
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