View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13704_low_3 (Length: 388)
Name: NF13704_low_3
Description: NF13704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13704_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 20899173 - 20898801
Alignment:
| Q |
1 |
acctccccgtctgcagtataagctcctcagtctctttgatcagatcttctgtaagcaatggtgcttcctacataaaacatacattaatgttaatattgaa |
100 |
Q |
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| T |
20899173 |
acctccccgtctgcagtataagctcctcagtctctttgatcagatcttctgtaagcaacggtgcttcctacataaaacatacattaatgttaatattgaa |
20899074 |
T |
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| Q |
101 |
aatttggaacaaatttaagtcatgaatgtgtggtgacaagatatgtcaaactcaaacctgggtgataggagagtatgcaggctcgccagtttccaataac |
200 |
Q |
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| T |
20899073 |
aatttggaacaaatttaagtcgtgaatgtgtagtgacaagatatgtgaaactcaaacctgggtgataggagagtatgcaggctcgccagtttccaataac |
20898974 |
T |
|
| Q |
201 |
gtaaggtttccggatggacaatgagcaccaagtcgaagaacaagctctccagtacttaatcgagcatataataagcgacttgcagaagtaacatcacaac |
300 |
Q |
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| T |
20898973 |
gtaaggtttccggatggacaatgagcaccaagtcgaagaacaagctctccagtacttaatcgagcatataataagcgacttgcagaagtaccatcacaac |
20898874 |
T |
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| Q |
301 |
tgtttgttgattccggtgtattatttgaatttgcttccatcaacatagagtccagggattcacttgcaatgat |
373 |
Q |
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| T |
20898873 |
agtttgttgattccggtgtattgtttgaatttgcttccatcaacatatagtccagggattcacttgcaatgat |
20898801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 40700372 - 40700328
Alignment:
| Q |
152 |
tcaaacctgggtgataggagagtatgcaggctcgccagtttccaa |
196 |
Q |
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| T |
40700372 |
tcaaacctgggtgacaggagagtacacaggctcgccagtttccaa |
40700328 |
T |
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