View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13704_low_4 (Length: 364)
Name: NF13704_low_4
Description: NF13704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13704_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 16686629 - 16686285
Alignment:
| Q |
1 |
ttatgggaaaggtcaagatcaataaagcatggcgacacaagaaattttctctattagattctatttctttgtgcaattttttaggacaaggacattgcta |
100 |
Q |
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| T |
16686629 |
ttatgggaaaggtcaagatcaataaagcatggcgacacaagaaattctctctattagattctatttctttgtgcaatttttaaggacaaggacattgcta |
16686530 |
T |
|
| Q |
101 |
tttaataatgtggttagttagttttgataactaaaattttgggatttggttggcaaacatcagaagcaga---tggatgtagccttaaacttcggtcact |
197 |
Q |
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| T |
16686529 |
ttttataatgtggttagttagttttgataactaaaattttgggatttggttggcaaacatcagaagcagaagttggttgtagccttaaacttcggtcact |
16686430 |
T |
|
| Q |
198 |
tgagtcttaagagaccaaatcgttaaagcaaaataatgtattnnnnnnngatttccttcatctctttaggtgtcttatttccgatttacatgcttttaag |
297 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
16686429 |
tgagtcttaagagaccaaatcgttaaagaaaattaatgtattaaaaaaagattttcttcatctctttaggtgtcttgtttccgatttacatacttttaag |
16686330 |
T |
|
| Q |
298 |
aaaatgattacctatgggtacatatcagtatatattgctaccaaa |
342 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
16686329 |
aaaatgattatctatgggtacatatcagtatatattactaccaaa |
16686285 |
T |
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