View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13704_low_8 (Length: 252)
Name: NF13704_low_8
Description: NF13704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13704_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 20899113 - 20898974
Alignment:
| Q |
1 |
gtgcttcctacataaaacatacattaatgttaatattgaaaatttggaacaaatttaagtcatgaatgtgtggtgacaagatatgtcaaactcaaacctg |
100 |
Q |
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| T |
20899113 |
gtgcttcctacataaaacatacattaatgttaatattgaaaatttggaacaaatttaagtcgtgaatgtgtagtgacaagatatgtgaaactcaaacctg |
20899014 |
T |
|
| Q |
101 |
ggtgataggagagtatgcaggctcgccagtttcctataac |
140 |
Q |
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| T |
20899013 |
ggtgataggagagtatgcaggctcgccagtttccaataac |
20898974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 12551777 - 12551883
Alignment:
| Q |
128 |
agtttcctataacctatagttttgtcttggaacattaattcattgtgcaatattattatgggtaggtcaccatgttgtgatgaaattggtgtaaagaaag |
227 |
Q |
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| T |
12551777 |
agtttcctataacctatagttttgtcttggaacattaattcattgtgcaatattattatgggtaggtcaccatgttgtgatgaaattggtgtaaagaaag |
12551876 |
T |
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| Q |
228 |
ggccatg |
234 |
Q |
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||||||| |
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| T |
12551877 |
ggccatg |
12551883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 40700372 - 40700330
Alignment:
| Q |
92 |
tcaaacctgggtgataggagagtatgcaggctcgccagtttcc |
134 |
Q |
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| T |
40700372 |
tcaaacctgggtgacaggagagtacacaggctcgccagtttcc |
40700330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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