View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13704_low_9 (Length: 246)

Name: NF13704_low_9
Description: NF13704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13704_low_9
NF13704_low_9
[»] chr1 (19 HSPs)
chr1 (19-222)||(2512309-2512512)
chr1 (112-162)||(2352300-2352350)
chr1 (131-167)||(2961206-2961242)
chr1 (131-167)||(10380492-10380528)
chr1 (131-167)||(14281600-14281636)
chr1 (131-167)||(29312449-29312485)
chr1 (119-167)||(34718889-34718937)
chr1 (131-167)||(38830493-38830529)
chr1 (116-167)||(2352411-2352462)
chr1 (132-167)||(24595020-24595055)
chr1 (132-167)||(46320251-46320286)
chr1 (122-167)||(45536265-45536310)
chr1 (131-167)||(9302021-9302057)
chr1 (131-167)||(9548682-9548718)
chr1 (119-167)||(9548774-9548822)
chr1 (131-167)||(23398090-23398126)
chr1 (131-167)||(28359173-28359209)
chr1 (131-167)||(28989282-28989318)
chr1 (135-167)||(40161275-40161307)
[»] chr4 (28 HSPs)
chr4 (119-162)||(5970386-5970429)
chr4 (120-167)||(27006504-27006551)
chr4 (114-167)||(47948932-47948985)
chr4 (119-167)||(2279522-2279570)
chr4 (119-167)||(23125644-23125692)
chr4 (117-167)||(31227267-31227317)
chr4 (122-167)||(31854481-31854526)
chr4 (118-167)||(36099484-36099533)
chr4 (118-167)||(53621430-53621479)
chr4 (119-167)||(2411942-2411990)
chr4 (131-167)||(4758879-4758915)
chr4 (131-167)||(18135415-18135451)
chr4 (131-167)||(18430357-18430393)
chr4 (119-167)||(38688013-38688061)
chr4 (115-167)||(44200074-44200126)
chr4 (131-167)||(49122622-49122658)
chr4 (119-167)||(51833010-51833058)
chr4 (120-167)||(3085974-3086021)
chr4 (119-161)||(19485570-19485612)
chr4 (113-167)||(19485674-19485728)
chr4 (134-167)||(6246621-6246654)
chr4 (118-167)||(7350308-7350357)
chr4 (118-167)||(53621325-53621374)
chr4 (134-167)||(56216247-56216280)
chr4 (131-167)||(580513-580549)
chr4 (131-167)||(2385297-2385333)
chr4 (119-167)||(4758775-4758823)
chr4 (119-167)||(53303734-53303782)
[»] chr3 (31 HSPs)
chr3 (116-167)||(14768093-14768144)
chr3 (121-167)||(21653446-21653492)
chr3 (117-161)||(25846619-25846663)
chr3 (119-167)||(28945654-28945702)
chr3 (120-167)||(9465173-9465220)
chr3 (119-162)||(18765365-18765408)
chr3 (117-167)||(3484328-3484378)
chr3 (117-167)||(10049770-10049820)
chr3 (112-162)||(28945763-28945813)
chr3 (118-167)||(23825146-23825195)
chr3 (122-167)||(49122945-49122990)
chr3 (130-167)||(52114126-52114163)
chr3 (131-167)||(6087003-6087039)
chr3 (131-167)||(8243784-8243820)
chr3 (131-167)||(9440230-9440266)
chr3 (131-167)||(10049678-10049714)
chr3 (131-167)||(26999031-26999067)
chr3 (119-167)||(42605929-42605977)
chr3 (120-167)||(29019734-29019781)
chr3 (132-167)||(47449927-47449962)
chr3 (132-167)||(51698216-51698251)
chr3 (119-161)||(13826110-13826152)
chr3 (122-160)||(25113458-25113496)
chr3 (118-164)||(28406572-28406618)
chr3 (129-167)||(40141976-40142014)
chr3 (118-167)||(6086898-6086947)
chr3 (118-167)||(29019837-29019886)
chr3 (118-167)||(40215002-40215051)
chr3 (119-167)||(26999123-26999171)
chr3 (119-167)||(39341370-39341418)
chr3 (133-161)||(42841877-42841905)
[»] scaffold0024 (1 HSPs)
scaffold0024 (113-167)||(35946-36000)
[»] chr2 (25 HSPs)
chr2 (117-167)||(39377832-39377882)
chr2 (127-167)||(18452575-18452615)
chr2 (119-167)||(29866080-29866128)
chr2 (119-167)||(30864777-30864825)
chr2 (119-167)||(42263572-42263620)
chr2 (120-167)||(39377933-39377980)
chr2 (120-167)||(45065682-45065729)
chr2 (120-162)||(20427000-20427042)
chr2 (117-162)||(13775707-13775752)
chr2 (131-167)||(6761475-6761511)
chr2 (119-159)||(11711434-11711474)
chr2 (131-167)||(16241369-16241405)
chr2 (131-167)||(25892046-25892082)
chr2 (120-160)||(41260024-41260064)
chr2 (119-167)||(43658027-43658075)
chr2 (131-167)||(44737384-44737420)
chr2 (120-167)||(1944636-1944683)
chr2 (120-167)||(3264921-3264968)
chr2 (118-167)||(6761567-6761616)
chr2 (134-167)||(11363100-11363133)
chr2 (132-161)||(32880918-32880947)
chr2 (119-167)||(42471003-42471054)
chr2 (112-160)||(3838409-3838457)
chr2 (131-167)||(7765896-7765932)
chr2 (131-167)||(40430768-40430804)
[»] chr8 (19 HSPs)
chr8 (118-167)||(2339287-2339336)
chr8 (120-167)||(29563657-29563704)
chr8 (120-167)||(45145868-45145915)
chr8 (119-161)||(37564739-37564781)
chr8 (131-167)||(2229172-2229208)
chr8 (131-167)||(12270158-12270194)
chr8 (132-167)||(25847978-25848013)
chr8 (132-167)||(32159136-32159171)
chr8 (120-167)||(33642457-33642504)
chr8 (120-167)||(33837579-33837626)
chr8 (131-161)||(11293295-11293325)
chr8 (117-167)||(41915696-41915746)
chr8 (119-160)||(34157658-34157699)
chr8 (118-167)||(41915591-41915640)
chr8 (119-167)||(2229068-2229116)
chr8 (119-167)||(7668189-7668237)
chr8 (131-167)||(22781892-22781928)
chr8 (120-160)||(29916526-29916566)
chr8 (131-167)||(42351300-42351336)
[»] chr5 (24 HSPs)
chr5 (114-167)||(6338417-6338470)
chr5 (120-167)||(7053647-7053694)
chr5 (120-167)||(9601695-9601742)
chr5 (116-167)||(15569433-15569484)
chr5 (118-167)||(25027691-25027740)
chr5 (120-161)||(26898190-26898231)
chr5 (131-167)||(1108293-1108329)
chr5 (119-167)||(2959341-2959389)
chr5 (119-167)||(2967810-2967858)
chr5 (119-167)||(7945835-7945883)
chr5 (131-167)||(13144890-13144926)
chr5 (131-167)||(37699882-37699918)
chr5 (131-167)||(41989574-41989610)
chr5 (120-167)||(7749917-7749964)
chr5 (132-167)||(29374181-29374216)
chr5 (120-167)||(31803060-31803107)
chr5 (133-167)||(36419087-36419121)
chr5 (118-167)||(9601590-9601639)
chr5 (116-161)||(41815180-41815225)
chr5 (131-167)||(1643354-1643390)
chr5 (117-161)||(21610409-21610453)
chr5 (119-167)||(25027796-25027844)
chr5 (119-167)||(29374272-29374320)
chr5 (131-167)||(41046838-41046874)
[»] scaffold0002 (1 HSPs)
scaffold0002 (119-167)||(492407-492455)
[»] chr6 (19 HSPs)
chr6 (119-167)||(24949733-24949781)
chr6 (127-167)||(30686550-30686590)
chr6 (120-167)||(390907-390954)
chr6 (119-162)||(6045788-6045831)
chr6 (127-167)||(6801653-6801693)
chr6 (131-167)||(7405454-7405490)
chr6 (119-167)||(8558912-8558960)
chr6 (115-167)||(14931355-14931407)
chr6 (131-167)||(22880928-22880964)
chr6 (131-167)||(22898863-22898899)
chr6 (120-167)||(14931257-14931304)
chr6 (132-167)||(17225345-17225380)
chr6 (118-167)||(885599-885648)
chr6 (119-167)||(6047898-6047946)
chr6 (119-167)||(24949629-24949677)
chr6 (131-167)||(31971132-31971168)
chr6 (131-167)||(33859500-33859536)
chr6 (127-167)||(34639046-34639086)
chr6 (131-167)||(34639142-34639178)
[»] chr7 (10 HSPs)
chr7 (120-167)||(35427761-35427808)
chr7 (118-167)||(34281771-34281820)
chr7 (119-167)||(3411330-3411378)
chr7 (131-167)||(5909573-5909609)
chr7 (131-167)||(12763239-12763275)
chr7 (131-167)||(23248770-23248806)
chr7 (120-159)||(5347832-5347871)
chr7 (116-167)||(30866240-30866291)
chr7 (120-161)||(7463448-7463489)
chr7 (119-167)||(10599418-10599466)
[»] scaffold0221 (1 HSPs)
scaffold0221 (119-167)||(11028-11076)
[»] scaffold0123 (1 HSPs)
scaffold0123 (120-167)||(29243-29290)
[»] scaffold0067 (1 HSPs)
scaffold0067 (117-160)||(5212-5255)
[»] scaffold2107 (2 HSPs)
scaffold2107 (131-167)||(453-489)
scaffold2107 (119-167)||(545-593)
[»] scaffold0144 (1 HSPs)
scaffold0144 (131-167)||(38835-38871)
[»] scaffold0009 (1 HSPs)
scaffold0009 (135-167)||(3742-3774)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 2512309 - 2512512
Alignment:
Q  19 gtggcaacaacatccaaaccaatcatatggaaaacaataatttgccatgtttgaatgatgtttactccaactcttccgttgacatttggttgattatttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2512309 gtggcaacaacatccaaaccaatcatatggaaaacaataatttgccatgtttgaatgatgtttactccaactcttccgttgacatttggttgattatttt 2512408  T
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtacagaatatcgcatccataaaggaaggagggaaggggagagctatgagaagaaa 218  Q
    ||| ||| |||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2512409 atattccctccgatcctatttacaagagacaatttactttttagatacagaatagcgcatccataaaggaaggagggaaggggagagctatgagaagaaa 2512508  T
Q  219 gaaa 222  Q
    ||||    
T  2512509 gaaa 2512512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 2352300 - 2352350
Alignment:
Q  112 ttattttatactccttccagtcctatttacaagagacaatttactttttag 162  Q
    |||||| ||||| | ||| ||||||||||||||||||||||||||||||||    
T  2352300 ttatttaatactacctccggtcctatttacaagagacaatttactttttag 2352350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 2961242 - 2961206
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2961242 gtcctatttacaagagacaatttactttttagataca 2961206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 10380528 - 10380492
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10380528 gtcctatttacaagagacaatttactttttagataca 10380492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 14281600 - 14281636
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  14281600 gtcctatttacaagagacaatttactttttagataca 14281636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 29312449 - 29312485
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  29312449 gtcctatttacaagagacaatttactttttagataca 29312485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 34718889 - 34718937
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  34718889 atactccctccggtcctatttacaagagacaatttaatttttagataca 34718937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 38830493 - 38830529
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  38830493 gtcctatttacaagagacaatttactttttagataca 38830529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 2352462 - 2352411
Alignment:
Q  116 tttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  2352462 tttatactccctccggtcctatttacaagagacagttgactttttagataca 2352411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 24595055 - 24595020
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  24595055 tcctatttacaagagacaatttactttttagataca 24595020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 46320286 - 46320251
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  46320286 tcctatttacaagagacaatttactttttagataca 46320251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 45536310 - 45536265
Alignment:
Q  122 ctccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||| ||| ||||||||||||||||| |||||||||||||| ||||    
T  45536310 ctccctccggtcctatttacaagagataatttactttttagataca 45536265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 9302057 - 9302021
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  9302057 gtcctatttataagagacaatttactttttagataca 9302021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 9548682 - 9548718
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  9548682 gtcctatttacaagaaacaatttactttttagataca 9548718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 9548822 - 9548774
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||| |||| ||||||||| ||||    
T  9548822 atactccctccggtcctatttacaagagaaaattgactttttagataca 9548774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 23398090 - 23398126
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  23398090 gtcctatttacaagagacaacttactttttagataca 23398126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 28359209 - 28359173
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  28359209 gtcctatttacaagaaacaatttactttttagataca 28359173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 28989282 - 28989318
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  28989282 gtcctatttacaagaaacaatttactttttagataca 28989318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 40161307 - 40161275
Alignment:
Q  135 tatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||| ||||    
T  40161307 tatttacaagagacaatttactttttagataca 40161275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 5970429 - 5970386
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttag 162  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  5970429 atactccttccggtcctatttacaagagacaatttactttttag 5970386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 27006504 - 27006551
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||    
T  27006504 tactccctccagtcctatttacaagagacaatttactttttagataca 27006551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 47948932 - 47948985
Alignment:
Q  114 attttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||| ||||    
T  47948932 attttatactacctccagtcctacttacaagagacaatttactttttagataca 47948985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 2279522 - 2279570
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  2279522 atactccttctggtcctatttacaagagacaatttactttttagataca 2279570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 23125644 - 23125692
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  23125644 atactccctccggtcctatttacaagagacaatttactttttagataca 23125692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 31227267 - 31227317
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  31227267 ttatactccatccggtcctatttacaagaaacaatttactttttagataca 31227317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 31854526 - 31854481
Alignment:
Q  122 ctccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||    
T  31854526 ctccttccggtcctatttacaagaaacaatttactttttagataca 31854481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 36099484 - 36099533
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| | ||| |||||||||||||||||||||||||||||||| ||||    
T  36099484 tatactacctccggtcctatttacaagagacaatttactttttagataca 36099533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 53621479 - 53621430
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| | ||| |||||||||||||||||||||||||||||||| ||||    
T  53621479 tatactacctccggtcctatttacaagagacaatttactttttagataca 53621430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 2411990 - 2411942
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| | ||||||||||||||||| |||||||||||||||| ||||    
T  2411990 atactcccttcagtcctatttacaagaaacaatttactttttagataca 2411942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 4758915 - 4758879
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  4758915 gtcctatttacaagagacaatttactttttagataca 4758879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 18135451 - 18135415
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  18135451 gtcctatttacaagagacaatttactttttagataca 18135415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 18430393 - 18430357
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  18430393 gtcctatttacaagagacaatttactttttagataca 18430357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 38688061 - 38688013
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  38688061 atactccctccggtcctatttacaagaaacaatttactttttagataca 38688013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 44200126 - 44200074
Alignment:
Q  115 ttttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||| |||||| ||| ||| |||||||||||||||||||||||||||| ||||    
T  44200126 ttttctactccctccggtcttatttacaagagacaatttactttttagataca 44200074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 49122658 - 49122622
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  49122658 gtcctatttacaagagacaatttactttttagataca 49122622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 51833010 - 51833058
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  51833010 atactccatccggtcctatttacaagagacaatttattttttagataca 51833058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 3086021 - 3085974
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  3086021 tactccctccggtcctatttacaagagacaatttattttttagataca 3085974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 19485570 - 19485612
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttacttttta 161  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||    
T  19485570 atactccctcctgtcctatttacaagaaacaatttacttttta 19485612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 19485728 - 19485674
Alignment:
Q  113 tattttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||| ||| ||||||||||||||||| |||| | ||||||| ||||    
T  19485728 tattttatactccctccggtcctatttacaagagaaaattgattttttagataca 19485674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 6246621 - 6246654
Alignment:
Q  134 ctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||| ||||    
T  6246621 ctatttacaagagacaatttactttttagataca 6246654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 7350357 - 7350308
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| |||  ||| |||||||||||||||||||||||||||| ||||    
T  7350357 tatactctttctggtcatatttacaagagacaatttactttttagataca 7350308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 53621325 - 53621374
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  53621325 tatactccctccggtcctatttacaagagacagttgactttttagataca 53621374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 56216247 - 56216280
Alignment:
Q  134 ctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||| ||||    
T  56216247 ctatttacaagagacaatttactttttagataca 56216280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 580549 - 580513
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  580549 gtcctatttacaagagacaatttattttttagataca 580513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 2385333 - 2385297
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  2385333 gtcctatttacaagagacaatttaatttttagataca 2385297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 4758775 - 4758823
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  4758775 atactccctccggtcctatttacaagagacagttgactttttagataca 4758823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 53303734 - 53303782
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||||||||||| ||||||||| ||||||| ||||    
T  53303734 atactccatccggtcctatttacaagtgacaatttattttttagataca 53303782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 14768093 - 14768144
Alignment:
Q  116 tttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  14768093 tttatactccctccggtcctatttacaagagacaatttactttttagataca 14768144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 21653492 - 21653446
Alignment:
Q  121 actccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  21653492 actcattccagtcctatttacaagagacaatttactttttagataca 21653446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 25846663 - 25846619
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttacttttta 161  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  25846663 ttatactacttccggtcctatttacaagagacaatttacttttta 25846619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 28945654 - 28945702
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  28945654 atactccctccggtcctatttacaagagacaatttactttttagataca 28945702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 9465220 - 9465173
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  9465220 tactccctccggtcctatttacaagagacaatttactttttagataca 9465173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 18765408 - 18765365
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttag 162  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||    
T  18765408 atactccttccggtcctatttacaagaaacaatttactttttag 18765365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 3484328 - 3484378
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||| |||||||||||||||||||||||||| | ||||||| ||||    
T  3484328 ttatactccctccagtcctatttacaagagacaattaattttttagataca 3484378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 10049820 - 10049770
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||| ||||    
T  10049820 ttatactccctccggtcctatttacaagagacaattgactttttagataca 10049770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 28945813 - 28945763
Alignment:
Q  112 ttattttatactccttccagtcctatttacaagagacaatttactttttag 162  Q
    |||||||||||||| ||| ||||||||||||||||| |||| |||||||||    
T  28945813 ttattttatactccctccggtcctatttacaagagaaaattgactttttag 28945763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 23825146 - 23825195
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| |||| |||||||||||||| |||||||||||||||| ||||    
T  23825146 tatactccctccaatcctatttacaagaaacaatttactttttagataca 23825195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 49122945 - 49122990
Alignment:
Q  122 ctccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||| ||| |||||||||||||||||||||||||||||||| ||||    
T  49122945 ctccctccggtcctatttacaagagacaatttactttttagataca 49122990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 52114163 - 52114126
Alignment:
Q  130 agtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  52114163 agtcctatttacaagagacaatttactttttagataca 52114126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 6087039 - 6087003
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  6087039 gtcctatttacaagagacaatttactttttagataca 6087003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 8243820 - 8243784
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  8243820 gtcctatttacaagagacaatttactttttagataca 8243784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 9440266 - 9440230
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  9440266 gtcctatttacaagagacaatttactttttagataca 9440230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 10049678 - 10049714
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10049678 gtcctatttacaagagacaatttactttttagataca 10049714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 26999031 - 26999067
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26999031 gtcctatttacaagagacaatttactttttagataca 26999067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 42605977 - 42605929
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||| ||||||||||||||||||||||||| ||||    
T  42605977 atactccctccggtcctacttacaagagacaatttactttttagataca 42605929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 29019734 - 29019781
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| ||||||||||||||||||||||||| |||||| ||||    
T  29019734 tactccctccggtcctatttacaagagacaatttacattttagataca 29019781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 47449927 - 47449962
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  47449927 tcctatttacaagagacaatttactttttagataca 47449962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 51698251 - 51698216
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  51698251 tcctatttacaagagacaatttactttttagataca 51698216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 13826110 - 13826152
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttacttttta 161  Q
    ||||||||||| ||||||||||||||| || ||||||||||||    
T  13826110 atactccttccggtcctatttacaagaaacgatttacttttta 13826152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 25113496 - 25113458
Alignment:
Q  122 ctccttccagtcctatttacaagagacaatttacttttt 160  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  25113496 ctccctccggtcctatttacaagagacaatttacttttt 25113458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 28406618 - 28406572
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggt 164  Q
    |||||||| ||| ||||||||||||||| |||||| |||||||||||    
T  28406618 tatactccctccggtcctatttacaagaaacaattgactttttaggt 28406572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 40142014 - 40141976
Alignment:
Q  129 cagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  40142014 cagtcctatttacaagaaacaatttactttttagataca 40141976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 6086898 - 6086947
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  6086898 tatactccctccggtcctatttacaagagacagttgactttttagataca 6086947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 29019886 - 29019837
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| | ||||||||||||||||||| |||| ||||||||| ||||    
T  29019886 tatactcccttcagtcctatttacaagagaaaattgactttttagataca 29019837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 40215051 - 40215002
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||| |||||||||| ||||||||| ||||||||||| ||||    
T  40215051 tatactccctccggtcctatttataagagacaagttactttttagataca 40215002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 26999171 - 26999123
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  26999171 atactccctccggtcctatttacaagagacatttgactttttagataca 26999123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 39341370 - 39341418
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||| |||| ||||||||| ||||    
T  39341370 atactccctccggtcctatttacaagagaaaattgactttttagataca 39341418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 161
Target Start/End: Complemental strand, 42841905 - 42841877
Alignment:
Q  133 cctatttacaagagacaatttacttttta 161  Q
    |||||||||||||||||||||||||||||    
T  42841905 cctatttacaagagacaatttacttttta 42841877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 35946 - 36000
Alignment:
Q  113 tattttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  35946 tatttaatactccctccggtcctatttacaagagacaatttactttttagataca 36000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 39377832 - 39377882
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  39377832 ttatactccctccggtcctatttacaagagacaatttactttttagataca 39377882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 18452575 - 18452615
Alignment:
Q  127 tccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  18452575 tccagtcctatttacaagagacaatttactttttagataca 18452615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 29866080 - 29866128
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  29866080 atactccctccggtcctatttacaagagacaatttactttttagataca 29866128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 30864825 - 30864777
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  30864825 atactccctccagtcttatttacaagagacaatttactttttagataca 30864777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 42263620 - 42263572
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  42263620 atactccctccagtcctatttacaagaaacaatttactttttagataca 42263572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 39377980 - 39377933
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  39377980 tacttcttccggtcctatttacaagagacaatttactttttagataca 39377933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 45065729 - 45065682
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  45065729 tactccctccagttctatttacaagagacaatttactttttagataca 45065682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 20427000 - 20427042
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttag 162  Q
    |||||| ||| ||||||||||||||||||||||||||||||||    
T  20427000 tactccctccggtcctatttacaagagacaatttactttttag 20427042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 13775707 - 13775752
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttactttttag 162  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  13775707 ttatactccctccggtcctatttacaagagataatttactttttag 13775752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 6761475 - 6761511
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  6761475 gtcctatttacaagagacaatttactttttagataca 6761511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 11711474 - 11711434
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttt 159  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  11711474 atactccctccggtcctatttacaagagacaatttactttt 11711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 16241405 - 16241369
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  16241405 gtcctatttacaagagacaatttactttttagataca 16241369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 25892082 - 25892046
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25892082 gtcctatttacaagagacaatttactttttagataca 25892046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 41260024 - 41260064
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttacttttt 160  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  41260024 tactccctccggtcctatttacaagagacaatttacttttt 41260064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 43658075 - 43658027
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| | ||||||||||||||||||| |||||||||||||| ||||    
T  43658075 atactcccttcagtcctatttacaagagataatttactttttagataca 43658027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 44737420 - 44737384
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  44737420 gtcctatttacaagagacaatttactttttagataca 44737384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 1944683 - 1944636
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||||||| |||||||||||||||| ||||||||||| ||||    
T  1944683 tactccctccagtcatatttacaagagacaagttactttttagataca 1944636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 3264921 - 3264968
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  3264921 tactccttccgattctatttacaagagacaatttactttttagataca 3264968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 6761616 - 6761567
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  6761616 tatactccctccggtcctatttacaagagacagttgactttttagataca 6761567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 11363133 - 11363100
Alignment:
Q  134 ctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||| ||||    
T  11363133 ctatttacaagagacaatttactttttagataca 11363100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 32880918 - 32880947
Alignment:
Q  132 tcctatttacaagagacaatttacttttta 161  Q
    ||||||||||||||||||||||||||||||    
T  32880918 tcctatttacaagagacaatttacttttta 32880947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 42471054 - 42471003
Alignment:
Q  119 atactccttccagtcctattta---caagagacaatttactttttaggtaca 167  Q
    |||||| |||||||||||||||   |||||||||||||||||||||| ||||    
T  42471054 atactctttccagtcctatttattacaagagacaatttactttttagataca 42471003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 3838409 - 3838457
Alignment:
Q  112 ttattttatactccttccagtcctatttacaagagacaatttacttttt 160  Q
    |||||||||||| | ||||||||||| || |||| ||||||||||||||    
T  3838409 ttattttatacttcctccagtcctatatataagaaacaatttacttttt 3838457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 7765932 - 7765896
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  7765932 gtcctatttataagagacaatttactttttagataca 7765896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 40430804 - 40430768
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  40430804 gtcctatttataagagacaatttactttttagataca 40430768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 2339287 - 2339336
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  2339287 tatactccctccggtcctatttacaagagacaatttactttttagataca 2339336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 29563657 - 29563704
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  29563657 tactccctccggtcctatttacaagagacaatttactttttagataca 29563704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 45145868 - 45145915
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  45145868 tactccctccggtcctatttacaagagacaatttactttttagataca 45145915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 37564781 - 37564739
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttacttttta 161  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  37564781 atactctttccggtcctatttacaagagacaatttacttttta 37564739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 2229208 - 2229172
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  2229208 gtcctatttacaagagacaatttactttttagataca 2229172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 12270194 - 12270158
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12270194 gtcctatttacaagagacaatttactttttagataca 12270158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 25847978 - 25848013
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  25847978 tcctatttacaagagacaatttactttttagataca 25848013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 32159171 - 32159136
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  32159171 tcctatttacaagagacaatttactttttagataca 32159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 33642457 - 33642504
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| ||||||||||||||||| |||||||||||||| ||||    
T  33642457 tactccctccggtcctatttacaagagataatttactttttagataca 33642504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 33837579 - 33837626
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| || ||||||||||||||||||||||||||||| ||||    
T  33837579 tactccctccggttctatttacaagagacaatttactttttagataca 33837626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 11293325 - 11293295
Alignment:
Q  131 gtcctatttacaagagacaatttacttttta 161  Q
    |||||||||||||||||||||||||||||||    
T  11293325 gtcctatttacaagagacaatttacttttta 11293295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 41915746 - 41915696
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||| ||| ||||||||||||||||| |||| ||||||||| ||||    
T  41915746 ttatactccctccggtcctatttacaagagaaaattgactttttagataca 41915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 34157658 - 34157699
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttacttttt 160  Q
    ||||||| |||| |||||||||||||||| ||||||||||||    
T  34157658 atactccctccaatcctatttacaagagataatttacttttt 34157699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 41915591 - 41915640
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||| |||||||||| ||||||||||||| ||||||| ||||    
T  41915591 tatactccctccggtcctatttataagagacaatttaatttttagataca 41915640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 2229068 - 2229116
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  2229068 atactccctccggtcctatttacaagagacagttgactttttagataca 2229116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 7668189 - 7668237
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||| |||||  ||||||||||||||||||||||| ||||||| ||||    
T  7668189 atacttcttccgatcctatttacaagagacaatttattttttagataca 7668237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 22781892 - 22781928
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  22781892 gtcctatttacaagaaacaatttactttttagataca 22781928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 29916526 - 29916566
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttacttttt 160  Q
    |||||| || |||||||||||||||| ||||||||||||||    
T  29916526 tactccctctagtcctatttacaagaaacaatttacttttt 29916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 42351336 - 42351300
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  42351336 gtcctatttacaagagacaatttattttttagataca 42351300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 6338470 - 6338417
Alignment:
Q  114 attttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  6338470 atttgatactccctccagtcctatttacaaaagacaatttactttttagataca 6338417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 7053647 - 7053694
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  7053647 tactccctccggtcctatttacaagagacaatttactttttagataca 7053694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 9601742 - 9601695
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  9601742 tactccctccggtcctatttacaagagacaatttactttttagataca 9601695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 15569484 - 15569433
Alignment:
Q  116 tttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||| ||||    
T  15569484 tttatacttcctccggtcctatttacaagagacaatttactttttagataca 15569433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 25027691 - 25027740
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| | ||| |||||||||||||||||||||||||||||||| ||||    
T  25027691 tatactacctccggtcctatttacaagagacaatttactttttagataca 25027740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 26898190 - 26898231
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttacttttta 161  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  26898190 tactcccttcagtcctatttacaagagacaatttacttttta 26898231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 1108293 - 1108329
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  1108293 gtcctatttacaagagacaatttactttttagataca 1108329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 2959389 - 2959341
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  2959389 atactccatccggtcctatttacaagaaacaatttactttttagataca 2959341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 2967858 - 2967810
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  2967858 atactccatccggtcctatttacaagaaacaatttactttttagataca 2967810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 7945835 - 7945883
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  7945835 atactccctccggtcctatttacaagaaacaatttactttttagataca 7945883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 13144890 - 13144926
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13144890 gtcctatttacaagagacaatttactttttagataca 13144926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 37699918 - 37699882
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37699918 gtcctatttacaagagacaatttactttttagataca 37699882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 41989574 - 41989610
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  41989574 gtcctatttacaagagacaatttactttttagataca 41989610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 7749917 - 7749964
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  7749917 tactccctccggtcctatttacaagagacaatttaatttttagataca 7749964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 29374181 - 29374216
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29374181 tcctatttacaagagacaatttactttttagataca 29374216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 31803107 - 31803060
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  31803107 tactccctccggtcctatttacaagaaacaatttactttttagataca 31803060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 36419121 - 36419087
Alignment:
Q  133 cctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||| ||||    
T  36419121 cctatttacaagagacaatttactttttagataca 36419087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 9601590 - 9601639
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||| ||||||||||||||||| | || ||||||||| ||||    
T  9601590 tatactccttccggtcctatttacaagagaaagttgactttttagataca 9601639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 41815180 - 41815225
Alignment:
Q  116 tttatactccttccagtcctatttacaagagacaatttacttttta 161  Q
    ||||||||||||||  |||||||||||| | |||||||||||||||    
T  41815180 tttatactccttccgatcctatttacaataaacaatttacttttta 41815225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 1643354 - 1643390
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  1643354 gtcctatttacaatagacaatttactttttagataca 1643390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 21610453 - 21610409
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttacttttta 161  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||||||    
T  21610453 ttatactccctccggtcctatttacaagaaacaattaacttttta 21610409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 25027844 - 25027796
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  25027844 atactccctccggtcctatttacaagagacagttgactttttagataca 25027796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 29374320 - 29374272
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  29374320 atactccctccggtcctatttacaagagacagttgactttttagataca 29374272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 41046838 - 41046874
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  41046838 gtcctatttacaagagacaatctactttttagataca 41046874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 492455 - 492407
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| ||||    
T  492455 atactccctccagtcctatttacaagaaacaatttactttttagataca 492407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 24949781 - 24949733
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  24949781 atactccctccggtcctatttacaagagacaatttactttttagataca 24949733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 30686550 - 30686590
Alignment:
Q  127 tccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  30686550 tccagtcctatttacaagagacaatttactttttagataca 30686590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 390954 - 390907
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  390954 tactccctccggtcctatttacaagagacaatttactttttagataca 390907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 6045831 - 6045788
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttag 162  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||    
T  6045831 atactccctccggtcctatttacaagagacaatttactttttag 6045788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 6801693 - 6801653
Alignment:
Q  127 tccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||| |||||||||||||||| ||||    
T  6801693 tccagtcctatttacaagaaacaatttactttttagataca 6801653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 7405454 - 7405490
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7405454 gtcctatttacaagagacaatttactttttagataca 7405490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 8558912 - 8558960
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||| ||||    
T  8558912 atactccctccagtcctatttacaagagaaaattgactttttagataca 8558960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 14931407 - 14931355
Alignment:
Q  115 ttttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||| ||| ||| |||||||||||||||||| ||||||||| ||||    
T  14931407 ttttatactccctccggtcatatttacaagagacaattgactttttagataca 14931355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 22880928 - 22880964
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  22880928 gtcctatttacaagagacaatttactttttagataca 22880964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 22898863 - 22898899
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  22898863 gtcctatttacaagagacaatttactttttagataca 22898899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 14931257 - 14931304
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||| ||||| |||||||||| ||||||||||||||||||||| ||||    
T  14931257 tactacttccggtcctatttataagagacaatttactttttagataca 14931304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 17225380 - 17225345
Alignment:
Q  132 tcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||||||||| ||||    
T  17225380 tcctatttacaagagacaatttactttttagataca 17225345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 885599 - 885648
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| ||| ||||||||||||||||||| || ||||||||| ||||    
T  885599 tatactccctccggtcctatttacaagagacagttgactttttagataca 885648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 6047946 - 6047898
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||| ||||||||||||| |||||||||||||| ||||    
T  6047946 atactccctccggtcatatttacaagagataatttactttttagataca 6047898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 24949629 - 24949677
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||| |||| ||||||||| ||||    
T  24949629 atactccctccggtcctatttacaagagaaaattgactttttagataca 24949677  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 31971168 - 31971132
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  31971168 gtcctatttacaagagacaatttacattttagataca 31971132  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 33859500 - 33859536
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  33859500 gtcctatttacaatagacaatttactttttagataca 33859536  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 34639046 - 34639086
Alignment:
Q  127 tccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||||||||||| || ||||||||| ||||    
T  34639046 tccagtcctatttacaagagacagttgactttttagataca 34639086  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 34639178 - 34639142
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  34639178 gtcctatttataagagacaatttactttttagataca 34639142  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 35427808 - 35427761
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  35427808 tactccctccggtcctatttacaagagacaatttactttttagataca 35427761  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 34281820 - 34281771
Alignment:
Q  118 tatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||| | ||||| |||||||||||||||||||||||||||| ||||    
T  34281820 tatactcccttcagtcttatttacaagagacaatttactttttagataca 34281771  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 3411330 - 3411378
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||| ||||| ||| |||||||||||||||||||||||||||| ||||    
T  3411330 atacttcttccggtcttatttacaagagacaatttactttttagataca 3411378  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 5909609 - 5909573
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5909609 gtcctatttacaagagacaatttactttttagataca 5909573  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 12763239 - 12763275
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12763239 gtcctatttacaagagacaatttactttttagataca 12763275  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 23248806 - 23248770
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||||||| ||||    
T  23248806 gtcctatttacaagagacaatttactttttagataca 23248770  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 159
Target Start/End: Complemental strand, 5347871 - 5347832
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttt 159  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  5347871 tactccctccggtcctatttacaagagacaatttactttt 5347832  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 30866240 - 30866291
Alignment:
Q  116 tttatactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||  |||| |||||||||| ||||||||||||||||||||| ||||    
T  30866240 tttatactttttccggtcctatttaaaagagacaatttactttttagataca 30866291  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 7463448 - 7463489
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttacttttta 161  Q
    |||||| ||| ||||||||||||||| |||||||||||||||    
T  7463448 tactccctccggtcctatttacaagaaacaatttacttttta 7463489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 10599466 - 10599418
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| |||  ||||||||||||||||||||||| ||||||| ||||    
T  10599466 atactccctccgatcctatttacaagagacaatttattttttagataca 10599418  T

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Target: scaffold0221 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 11028 - 11076
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||| |||||||||||||||||||||||||| ||||    
T  11028 atactccctccggtcctttttacaagagacaatttactttttagataca 11076  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 29243 - 29290
Alignment:
Q  120 tactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||| ||||||||||||||| |||||||||||||||| ||||    
T  29243 tactccctccggtcctatttacaagaaacaatttactttttagataca 29290  T

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Target: scaffold0067 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 5212 - 5255
Alignment:
Q  117 ttatactccttccagtcctatttacaagagacaatttacttttt 160  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||    
T  5212 ttatactccctccagttctatttacaagaaacaatttacttttt 5255  T

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Target: scaffold2107 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 453 - 489
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  453 gtcctatttacaagaaacaatttactttttagataca 489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 593 - 545
Alignment:
Q  119 atactccttccagtcctatttacaagagacaatttactttttaggtaca 167  Q
    ||||||| ||| ||||||||||||||||| |||| ||||||||| ||||    
T  593 atactccctccggtcctatttacaagagaaaattgactttttagataca 545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 38835 - 38871
Alignment:
Q  131 gtcctatttacaagagacaatttactttttaggtaca 167  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  38835 gtcctagttacaagagacaatttactttttagataca 38871  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 3774 - 3742
Alignment:
Q  135 tatttacaagagacaatttactttttaggtaca 167  Q
    |||||||||||||||||||||||||||| ||||    
T  3774 tatttacaagagacaatttactttttagataca 3742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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