View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13705_high_2 (Length: 282)
Name: NF13705_high_2
Description: NF13705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13705_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 4877078 - 4876824
Alignment:
| Q |
18 |
tgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccatctgttgtattcccaagtcatag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4877078 |
tgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattcccaagtcatag |
4876979 |
T |
|
| Q |
118 |
agtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4876978 |
agtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagt |
4876879 |
T |
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| Q |
218 |
tccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4876878 |
tccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
4876824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 30189694 - 30189441
Alignment:
| Q |
19 |
gtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccatctgttgtattcccaagtcataga |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||| ||||| ||||||| |
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| T |
30189694 |
gtttttccatgttgaactggattttcagcaataacaattgctgatttactatcacagtaaaccacagttgcttccagctgttgtatccccaaatcataga |
30189595 |
T |
|
| Q |
119 |
gtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagtt |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30189594 |
ctattttcctcaaccaaatagcttgatttgctgctgcagctgcagctacatactctgcttcagccgtagattgagctacaatttcttgtttcctcgagtt |
30189495 |
T |
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| Q |
219 |
ccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
272 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30189494 |
ctatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
30189441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 17439765 - 17440019
Alignment:
| Q |
18 |
tgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccatctgttgtattcccaagtcatag |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
17439765 |
tgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattcccaagtcatcg |
17439864 |
T |
|
| Q |
118 |
agtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17439865 |
agtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagt |
17439964 |
T |
|
| Q |
218 |
tccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
272 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17439965 |
tccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
17440019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 3062435 - 3062181
Alignment:
| Q |
18 |
tgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccatctgttgtattcccaagtcatag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
3062435 |
tgtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtatgcccaagtcatag |
3062336 |
T |
|
| Q |
118 |
agtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3062335 |
agtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactttgcttcagccgtggattgagctacaatttcttgtttcctcgagt |
3062236 |
T |
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| Q |
218 |
tccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
272 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3062235 |
tccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
3062181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 26083263 - 26083516
Alignment:
| Q |
19 |
gtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccatctgttgtattcccaagtcataga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |
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| T |
26083263 |
gtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcaccataaagcacagttgcttccagctattgtattcccaagtcataga |
26083362 |
T |
|
| Q |
119 |
gtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttcctcgagtt |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26083363 |
gtattttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctacttcagccgtggattgagctacaatttcttgtttcctcgagtt |
26083462 |
T |
|
| Q |
219 |
ccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
272 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26083463 |
ccatgagaacatgccagagcctaaagaaaaagcatagcctgtagtactcttcat |
26083516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 13015373 - 13015492
Alignment:
| Q |
19 |
gtttttccatgttgaactggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccatctgttgtattcccaagtcataga |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13015373 |
gtttttccatgttgaattggattttcagcaatagcaattgctgatttactatcacaataaagcacagttgcttccagctgttgtattcccaagtcataga |
13015472 |
T |
|
| Q |
119 |
gtattttcctcaaccaaata |
138 |
Q |
| |
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|||||||||||||||||||| |
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| T |
13015473 |
gtattttcctcaaccaaata |
13015492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 35942767 - 35942681
Alignment:
| Q |
124 |
ttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttc |
210 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | ||| |||||| |||| ||||| || || || |||||||||| ||||||||| |
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|
| T |
35942767 |
ttcctcaaccaaatagcttgatttactgctgctgttgcagctacaaactcagcttctgctgttgactgagctacaacctcttgtttc |
35942681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 20330676 - 20330762
Alignment:
| Q |
124 |
ttcctcaaccaaatagcttggtttgctgctgcagctgcggctacatactctgcttcagccgtggattgagctacaatttcttgtttc |
210 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||| | ||| |||||| |||| ||||| || || || |||||||||| ||||||||| |
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|
| T |
20330676 |
ttcctcaaccaaatagcttgatttacagctgctgttgcagctacaaactcagcttctgctgttgactgagctacaacctcttgtttc |
20330762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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