View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13705_high_4 (Length: 232)
Name: NF13705_high_4
Description: NF13705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13705_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 6865504 - 6865302
Alignment:
| Q |
19 |
atccaagtacactcggaaagacttacacagctgcgaaatcttggtgaaactgattttctatgaattaacatttatgcagggagtaactaaacaaaatggt |
118 |
Q |
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| T |
6865504 |
atccaagtacactgggaaagacttacacagctgcgaaatattggtgaaactgattttctatgaattaacatttatgcagggagtaactaaacaaaatggt |
6865405 |
T |
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| Q |
119 |
agacctattgctaaggttgaggagtatgctcttggcatgatcagtggttctggatcaacattatttgaagaacttggacttgactatattggtcctgatg |
218 |
Q |
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| T |
6865404 |
agacctattgctaaggttgaggagtatgctcttggcatgatcagtggttctggatcaacattatttgaagaacttggacttgactatattggtcctgttg |
6865305 |
T |
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| Q |
219 |
atg |
221 |
Q |
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||| |
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| T |
6865304 |
atg |
6865302 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 49146622 - 49146709
Alignment:
| Q |
134 |
gttgaggagtatgctcttggcatgatcagtggttctggatcaacattatttgaagaacttggacttgactatattggtcctgatgatg |
221 |
Q |
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| T |
49146622 |
gttgatgagtatgctcgtggtatgatcagtggtactggatcaactctttttgaagagcttgggctctactatatcggtcctgttgatg |
49146709 |
T |
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