View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13705_low_1 (Length: 427)
Name: NF13705_low_1
Description: NF13705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13705_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 420
Target Start/End: Complemental strand, 30622374 - 30621973
Alignment:
| Q |
19 |
cccccaaccgcaccaacaatcctccacaaccatgcttgccttagctactctcctcccgaactctccgaatcaaatccaacaacattcgacaccttcgaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622374 |
cccccaaccgcaccaacaatcctccacaaccatgcttgccttagccactctcctcccgaactctccgaatcaaatccaacaacattcgacaccttcgaga |
30622275 |
T |
|
| Q |
119 |
tgcggaagctcttagacggtcacaatttggaagatcgcgactggctattcgggttgatgatacagagcggactattcaaccggcgggaagtcgacgggag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622274 |
tgcggaagctcttagacggtcacaatttggaagatcgcgactggctattcgggttgatgatacagagcggactattcaaccggcgggaagtcgacgggag |
30622175 |
T |
|
| Q |
219 |
ggtgtttgtgaatcctgattataaccagtccatggagcaacagagggaaatgaccatgaaacgaattgcgtatttgttggatcgtggtgtttttcgtggg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622174 |
ggtgtttgtgaatcctgattataaccagtccatggagcaacagagggaaatgaccatgaaacgaattgcgtatttgttggatcgtggtgtttttcgtggg |
30622075 |
T |
|
| Q |
319 |
tggcttactggtgatggcccacaagaggagttgaggaagttggctcttcacgaggttattggaatgtacgatcattctcttgctgttaagcttggtgttc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622074 |
tggcttactggtgatggcccacaagaggagttgaggaagttggctcttcacgaggttattggaatgtacgatcattctcttgctgttaagcttggtgttc |
30621975 |
T |
|
| Q |
419 |
at |
420 |
Q |
| |
|
|| |
|
|
| T |
30621974 |
at |
30621973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 356
Target Start/End: Complemental strand, 22418621 - 22418304
Alignment:
| Q |
22 |
ccaaccgcaccaacaatcctccacaaccatgcttgccttagctactctcctcccgaactctccgaatcaaatccaacaacattcgacaccttcgagatgc |
121 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
22418621 |
ccaaccacaccatcaatcctccaccaccacgcttgccttagctactctcctcccgatctctccgaatcaaatccaacaacattcaa-accttcgaaatgt |
22418523 |
T |
|
| Q |
122 |
ggaagctcttagacggtcacaatttggaagatcgcgactggctattcgggttgatgatacagagcggactattcaaccggcgggaagtcgacgggagggt |
221 |
Q |
| |
|
|||||||||||||||| || ||| ||||||| |||||||||||||||||| ||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
22418522 |
ggaagctcttagacggccataat----------------ggctatttgggttgatgatacagagcagactattcaaccgtcgggatgtcaacgggagggt |
22418439 |
T |
|
| Q |
222 |
gtttgtgaatcctgattataaccagtccatggagcaacagagggaaatgaccatgaaacgaattgcgtatttgttggatcgtggtgtttttcgtgggtgg |
321 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22418438 |
gtttgtgaatcctgattataatcagtccatggagcaacagagggagatgaccatgaaacgaattgcgtatttgttggatcgtggtgtgtttcgtgggtgg |
22418339 |
T |
|
| Q |
322 |
cttactggtgatggcccacaagaggagttgaggaa |
356 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
22418338 |
cttactagtgatggcctacaagaagagttgaggaa |
22418304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 282 - 399
Target Start/End: Complemental strand, 12813677 - 12813560
Alignment:
| Q |
282 |
aattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgatggcccacaagaggagttgaggaagttggctcttcacgaggttattgga |
381 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12813677 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattgga |
12813578 |
T |
|
| Q |
382 |
atgtacgatcattctctt |
399 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
12813577 |
atgtatgatcattctctt |
12813560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University