View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13705_low_5 (Length: 230)
Name: NF13705_low_5
Description: NF13705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13705_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 40257673 - 40257798
Alignment:
| Q |
90 |
atctaataatattttatcttttcgacacatcattttaaaacgaaaacttgaagnnnnnnnntaatatatttccctannnnnnncctttgttgtttgcttc |
189 |
Q |
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| T |
40257673 |
atctaataatattttatcttttcgacgcatcattttaaaacgaaaacttgaag--aaaaaataatatatttcccta-ttttttcctttgttgtttgcttc |
40257769 |
T |
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| Q |
190 |
cgttttgcggtgaattgtttcttctctct |
218 |
Q |
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| T |
40257770 |
cgttttgcggtgaattgtttcttctctct |
40257798 |
T |
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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 40257633 - 40257683
Alignment:
| Q |
19 |
aataaatacataacgactatataaaactcctttacatgatatctaataata |
69 |
Q |
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| T |
40257633 |
aataaatacataacgactatataaaactcctttacatgatatctaataata |
40257683 |
T |
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