View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13706_high_1 (Length: 1170)
Name: NF13706_high_1
Description: NF13706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13706_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 619; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 45 - 762
Target Start/End: Original strand, 34121504 - 34122230
Alignment:
| Q |
45 |
ttgactcactcgtggaacgaatcatgccagtagcggaagaaatgaaacaatttgatgaaaacttggatcgtccaaaggaagaaacagaaaggcaaatgga |
144 |
Q |
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||||||| |||||||||||||||| ||||| ||| |||||||| ||| ||| |||||||||||||||||||||||||||||||| || || |||||| |
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| T |
34121504 |
ttgactctctcgtggaacgaatcaagccagcagcagaagaaattgaacgattaaatgaaaacttggatcgtccaaaggaagaaacaaaagtgctaatgga |
34121603 |
T |
|
| Q |
145 |
agaacttgaacaagggaaaaaggtagttaagaaacactccaaagttccttggtggaaattttgttgtctaccttgcttccaaggagaacttcaagctaag |
244 |
Q |
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||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34121604 |
agaacttaaacaagggaaagaggtagttaacaaacactccaaagttccttggtggaaattttgttgtctaccttgcttccaaggagaacttcaagctaag |
34121703 |
T |
|
| Q |
245 |
gaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaagaaacactttctttagtgagagatttgaaggggagac |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
34121704 |
gaagagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaagagacactttctatagtgagagatttgaaggggagac |
34121803 |
T |
|
| Q |
345 |
aattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggttggatgtgcctctgcatcagttgaagaattgggtgct |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34121804 |
aattcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggttggatgtgcctctgcatcagttgaagaattgggtgct |
34121903 |
T |
|
| Q |
445 |
cagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaaccactttggctacgttgctatgttgcgatgacaaagtt |
544 |
Q |
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| T |
34121904 |
cagtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaaccactttggctacgttgctatgttgcgatgacaaagtt |
34122003 |
T |
|
| Q |
545 |
ataggtaacatatataactctatttacgcttcacttttattacttgtgtctacgtatta---------ctgtagtgtctgatcttcgtatttgtgttagt |
635 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34122004 |
ataggtaacatatataactctatttacgcttcacttttattacttgtgtctacgtattagtgtagtgtctgtagtgtctgatcttcgtatttgtgttagt |
34122103 |
T |
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| Q |
636 |
acttcataaataccttttaactaattggctaactaacttcattcataaggttttaaatcaaagttgcacaaatcattgtggtcgcgtcgtgatatttgat |
735 |
Q |
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| T |
34122104 |
acttcataaataccttttaactaattggctaactaacttcattcataaggttttaaatcaaagttgcagaaatcattgtggtcgcgtcgtgatatttgat |
34122203 |
T |
|
| Q |
736 |
attattgaaaatcatgatatagcttat |
762 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
34122204 |
attattgaaaatcatgatatagcttat |
34122230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 809 - 1159
Target Start/End: Original strand, 34122233 - 34122584
Alignment:
| Q |
809 |
tttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatttgaagaacattgtgcaaacattgtttgaaca |
908 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34122233 |
tttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatttgaagaacattgtgcaaacattgtttgaaca |
34122332 |
T |
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| Q |
909 |
ttgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattggagagaatcgtcgtccattgatg |
1008 |
Q |
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| T |
34122333 |
ttgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattggagagaatcgtcgtccattgatg |
34122432 |
T |
|
| Q |
1009 |
ttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgataacttctagagttaagt |
1108 |
Q |
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| T |
34122433 |
ttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgataacttctagagttaagt |
34122532 |
T |
|
| Q |
1109 |
ttccac-ggtttcaaacttcattattcttaaagcctcttagcgatgatgatg |
1159 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34122533 |
ttccacgggtttcaaacttcattattcttaaagcctcttagcgatgatgatg |
34122584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 792 - 1157
Target Start/End: Original strand, 34110461 - 34110820
Alignment:
| Q |
792 |
gatatttaagaatcttgtttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatttgaagaacattgtg |
891 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| | |||| |||| ||||||||||||||||| |
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| T |
34110461 |
gatatttaagaatcttatttgtttgtttggactaggtaaatttggggaaaatatattgttcttcactgtgtcaaaaattccaaatttgaagaacattgtg |
34110560 |
T |
|
| Q |
892 |
caaacattgtttgaacattgtggacataaaaagccttaccttgtagaccatgatgatgcggttaaaaacttgagatgtttgctcaacaaaattggagaga |
991 |
Q |
| |
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|| ||||| ||| ||||||||||||| | |||||| ||| ||||| | |||||||| |||||| |||||||| ||||||| | ||||||||| || | |
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| T |
34110561 |
cagacattatttcgacattgtggacatgacgagccttgcctcatagacgacgatgatgcagttaaacacttgagaagtttgctgaccaaaattggggaaa |
34110660 |
T |
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| Q |
992 |
atcgtcgtccattgatgttggttctagataatgttttccaaggctcagaatcctttgtcaatgccttcaaggttcaagttccagattataaaattttgat |
1091 |
Q |
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|| ||||| ||||||||||||| |||||||||| || ||||||||||||||| || | | ||| |||||||||||||||||| |||||||||||| |
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| T |
34110661 |
---gttgtccaatgatgttggttctggataatgtttgcccaggctcagaatccttagttgaggactttcaggttcaagttccagattgtaaaattttgat |
34110757 |
T |
|
| Q |
1092 |
aacttctagagttaagtttccacggtttcaaacttcattattcttaaagcctcttagcgatgatga |
1157 |
Q |
| |
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||||||||||||| |||||||||||||| | |||| ||||||||||||| || || |||||||| |
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| T |
34110758 |
aacttctagagttgagtttccacggttt---agttcactattcttaaagccgctcagagatgatga |
34110820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 47 - 552
Target Start/End: Original strand, 34109662 - 34110149
Alignment:
| Q |
47 |
gactcactcgtggaacgaatcatgccagtagcggaagaaatgaaacaatttgatgaaaacttggatcgtccaaaggaagaaacagaaaggcaaatggaag |
146 |
Q |
| |
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||||| || ||||| || |||| ||||||||| |||||||||| || ||| | || || ||||||| ||| | |||||||||||| | | ||| |||| |
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| T |
34109662 |
gactctctggtggatcggatcacgccagtagctgaagaaatgagactattaaacgagaaattggatcatccgatggaagaaacagagatgttaatagaag |
34109761 |
T |
|
| Q |
147 |
aacttgaacaagggaaaaaggtagttaagaaacactccaaagttccttggtggaaattttgttgtctaccttgcttccaaggagaacttcaagctaagga |
246 |
Q |
| |
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|||| |||||||||| | | ||| || |||||||||||||| || |||||||||| ||||||| ||||||| ||||||||||| || | | || || |
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| T |
34109762 |
aactgatacaagggaaagatgcagtaaacaaacactccaaagtcccatggtggaaatgttgttgtttaccttgtttccaaggagagatttatgatagaga |
34109861 |
T |
|
| Q |
247 |
agagaaaattgctagaacctgtagccttgttaccccgatgaacacggcaagagatgttaaagaaacactttctttagtgagagatttgaagg-ggagaca |
345 |
Q |
| |
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|||||||||||||||| || | || |||||||| ||||||||||||||||| ||||||||| | | | ||| || ||| |||| | ||| || || |
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| T |
34109862 |
agagaaaattgctagatccagcagtcttgttactccgatgaacacggcaagggatgttaaaaaggtattgtctatattgaaagataggcaggagggga-- |
34109959 |
T |
|
| Q |
346 |
attcaatttcaagaggttatgtgaatgtgatcctcctgtaaaacctgatttcactgttgggttggatgtgcctctgcatcagttgaagaattgggtgctc |
445 |
Q |
| |
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|| ||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||| | ||| || ||||||||||| |||| | ||| |
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| T |
34109960 |
--ggaaattcaagaggtt------atgtgatgctcctgtaaaacctgatctcactgttggattggattttcctttgattcagttgaagagttggttactc |
34110051 |
T |
|
| Q |
446 |
agtagtgatgtgtctgtagactctgtacatgtgttaactggcttggctggatccgggaaaaccactttggctacgttgctatgttgcgatgacaaagtta |
545 |
Q |
| |
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| |||| |||| ||||||| ||| ||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
34110052 |
ggcagtggtgtg---------tctgtacttgttttaaccggtttggctggatctggcaaaactactttggctacgttgctctgttgggatgacaaagtta |
34110142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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